Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CSPARA_RS05630 Genome accession   NZ_CP019684
Coordinates   1130056..1130802 (-) Length   248 a.a.
NCBI ID   WP_089182709.1    Uniprot ID   -
Organism   Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1125056..1135802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPARA_RS05610 (CSPARA_1123) speA 1125610..1127451 (+) 1842 WP_089182705.1 biosynthetic arginine decarboxylase -
  CSPARA_RS05615 (CSPARA_1124) cysE 1127455..1128147 (+) 693 WP_089189556.1 serine O-acetyltransferase -
  CSPARA_RS05620 (CSPARA_1125) - 1128174..1128773 (+) 600 WP_089189557.1 hypothetical protein -
  CSPARA_RS05625 (CSPARA_1126) - 1128825..1130003 (+) 1179 WP_089189558.1 pyridoxal phosphate-dependent aminotransferase -
  CSPARA_RS05630 (CSPARA_1127) proC 1130056..1130802 (-) 747 WP_089182709.1 pyrroline-5-carboxylate reductase Machinery gene
  CSPARA_RS05635 (CSPARA_1128) fliW 1130807..1131196 (-) 390 WP_089182710.1 flagellar assembly protein FliW -
  CSPARA_RS05640 (CSPARA_1129) - 1131340..1131984 (+) 645 WP_089182711.1 outer membrane protein assembly factor BamD -
  CSPARA_RS05645 (CSPARA_1130) lon 1131993..1134395 (+) 2403 WP_228568661.1 endopeptidase La -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26772.11 Da        Isoelectric Point: 7.5876

>NTDB_id=217799 CSPARA_RS05630 WP_089182709.1 1130056..1130802(-) (proC) [Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589]
MEEIFILGNGAMATAMAFGLKDKYSIVLVGRNRQKLENLAKQGFKTELYGDKFDINNKFIILAFKPYALDSVSQILSGKA
DLIISVLATSSLEEIKNQISSNRYIKAMPNIAAKFKSSITPFFSKDCQNEDEVILSTFGEICRVDSEDELNMAMAISGCA
PAYLALVAEAMACGCVSKGLKKDIAHSITAGVFKSISALLKESHPALIKESVCSPAGTTIEGVNVLEEHSVRSAFIKAIK
ASIDKASK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=217799 CSPARA_RS05630 WP_089182709.1 1130056..1130802(-) (proC) [Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589]
ATGGAAGAAATTTTTATACTTGGTAATGGAGCTATGGCAACTGCTATGGCTTTTGGATTAAAAGATAAATATAGCATTGT
TTTGGTTGGCAGAAACAGACAAAAATTAGAAAATTTAGCAAAACAAGGCTTTAAAACAGAGCTTTATGGAGATAAATTTG
ATATAAATAATAAATTTATAATACTAGCTTTTAAACCTTACGCTCTTGATAGTGTTAGTCAAATTTTAAGCGGAAAAGCT
GATTTGATTATAAGTGTTTTGGCTACATCTTCTCTTGAAGAGATAAAAAATCAAATTTCTTCAAATAGATATATAAAAGC
TATGCCAAATATAGCGGCTAAATTTAAATCTTCCATAACTCCTTTTTTCTCAAAAGATTGCCAAAATGAAGATGAGGTTA
TTTTATCTACATTTGGTGAAATTTGTAGAGTCGATAGTGAAGATGAGCTAAATATGGCAATGGCTATAAGCGGCTGTGCA
CCGGCGTATTTGGCTTTGGTTGCTGAAGCTATGGCTTGTGGTTGTGTTAGTAAAGGGCTTAAAAAAGATATAGCTCATAG
TATTACCGCTGGTGTTTTTAAAAGTATATCAGCCCTGCTAAAAGAATCTCATCCAGCTCTTATAAAAGAGTCTGTTTGCT
CGCCTGCTGGAACTACTATAGAAGGTGTTAATGTCTTAGAGGAGCATTCAGTAAGATCTGCTTTTATAAAAGCTATCAAA
GCAAGTATAGATAAAGCGAGTAAATAA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(147-247)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

51.452

97.177

0.5

Multiple sequence alignment