Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CSF_RS05700 Genome accession   NZ_CP019683
Coordinates   1144951..1145697 (-) Length   248 a.a.
NCBI ID   WP_089188342.1    Uniprot ID   -
Organism   Campylobacter sputorum bv. faecalis CCUG 20703     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139951..1150697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSF_RS05680 (CSF_1136) speA 1140504..1142345 (+) 1842 WP_089188339.1 biosynthetic arginine decarboxylase -
  CSF_RS05685 (CSF_1137) cysE 1142349..1143041 (+) 693 WP_089182706.1 serine O-acetyltransferase -
  CSF_RS05690 (CSF_1138) - 1143069..1143668 (+) 600 WP_089188340.1 hypothetical protein -
  CSF_RS05695 (CSF_1139) - 1143720..1144898 (+) 1179 WP_089188341.1 pyridoxal phosphate-dependent aminotransferase -
  CSF_RS05700 (CSF_1140) proC 1144951..1145697 (-) 747 WP_089188342.1 pyrroline-5-carboxylate reductase Machinery gene
  CSF_RS05705 (CSF_1141) fliW 1145702..1146091 (-) 390 WP_089182710.1 flagellar assembly protein FliW -
  CSF_RS05710 (CSF_1142) - 1146235..1146879 (+) 645 WP_089182711.1 outer membrane protein assembly factor BamD -
  CSF_RS05715 (CSF_1143) lon 1146888..1149290 (+) 2403 WP_235611185.1 endopeptidase La -
  CSF_RS09560 - 1149941..1150069 (+) 129 WP_418229956.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26834.18 Da        Isoelectric Point: 7.5876

>NTDB_id=217785 CSF_RS05700 WP_089188342.1 1144951..1145697(-) (proC) [Campylobacter sputorum bv. faecalis CCUG 20703]
MEEIFILGNGAMATAMAFGLKDKYSVVLVGRNRQKLENLAKQGFKTELYGDKFDINNKFIILAFKPYALDSVSQILSGKA
DLIISVLATSSLEEIKNQISSNRYIKAMPNIAAKFKSSITPFFSKDCQNEDEVILSTFGEICRVDSEDELNMAMAISGCA
PAYLALVAEAMACGCVSKGLKKDIAHSITAGVFKSVSALLKESHPALIKEFVCSPAGTTIEGVNVLEEHSVRSAFIKAIK
TSIDKASK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=217785 CSF_RS05700 WP_089188342.1 1144951..1145697(-) (proC) [Campylobacter sputorum bv. faecalis CCUG 20703]
ATGGAAGAAATTTTTATACTTGGTAATGGAGCTATGGCGACTGCTATGGCTTTTGGATTAAAAGATAAGTATAGTGTTGT
TTTGGTTGGCAGAAACAGACAAAAATTAGAAAATTTAGCAAAACAAGGCTTTAAAACAGAGCTTTATGGAGATAAATTTG
ATATAAATAATAAATTTATAATACTAGCTTTTAAACCTTACGCTCTTGATAGTGTTAGTCAAATTTTAAGCGGAAAAGCT
GATTTGATTATAAGTGTTTTGGCTACATCTTCTCTTGAAGAGATAAAAAATCAAATTTCTTCAAATAGATATATAAAAGC
TATGCCAAATATAGCGGCTAAATTTAAATCTTCCATAACTCCTTTTTTCTCAAAAGATTGCCAAAATGAAGATGAGGTTA
TTTTATCTACATTTGGTGAAATTTGTAGAGTTGATAGTGAAGATGAGCTAAATATGGCAATGGCGATAAGTGGCTGTGCA
CCGGCGTATTTGGCTTTGGTTGCTGAAGCTATGGCTTGCGGTTGTGTTAGTAAAGGGCTTAAAAAAGATATAGCTCATAG
TATTACCGCTGGTGTTTTTAAAAGTGTATCAGCCCTGCTAAAAGAATCTCACCCAGCTCTTATAAAAGAGTTTGTTTGTT
CGCCTGCTGGAACTACTATAGAAGGTGTTAATGTCTTAGAGGAGCATTCAGTAAGATCTGCTTTTATAAAAGCTATCAAA
ACAAGTATAGATAAAGCTAGTAAATAA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-88)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(147-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

50.622

97.177

0.492

Multiple sequence alignment