Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CSPUT_RS05645 Genome accession   NZ_CP019682
Coordinates   1127593..1128339 (-) Length   248 a.a.
NCBI ID   WP_089182709.1    Uniprot ID   -
Organism   Campylobacter sputorum aubsp. sputorum RM3237     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1122593..1133339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPUT_RS05625 (CSPUT_1116) speA 1123158..1124999 (+) 1842 WP_089182705.1 biosynthetic arginine decarboxylase -
  CSPUT_RS05630 (CSPUT_1117) cysE 1125003..1125695 (+) 693 WP_089182706.1 serine O-acetyltransferase -
  CSPUT_RS05635 (CSPUT_1118) - 1125722..1126321 (+) 600 WP_089182707.1 hypothetical protein -
  CSPUT_RS05640 (CSPUT_1119) - 1126373..1127524 (+) 1152 WP_089182708.1 pyridoxal phosphate-dependent aminotransferase -
  CSPUT_RS05645 (CSPUT_1120) proC 1127593..1128339 (-) 747 WP_089182709.1 pyrroline-5-carboxylate reductase Machinery gene
  CSPUT_RS05650 (CSPUT_1121) fliW 1128344..1128733 (-) 390 WP_089182710.1 flagellar assembly protein FliW -
  CSPUT_RS05655 (CSPUT_1122) - 1128877..1129521 (+) 645 WP_089182711.1 outer membrane protein assembly factor BamD -
  CSPUT_RS05660 (CSPUT_1123) lon 1129530..1131932 (+) 2403 WP_235610052.1 endopeptidase La -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26772.11 Da        Isoelectric Point: 7.5876

>NTDB_id=217771 CSPUT_RS05645 WP_089182709.1 1127593..1128339(-) (proC) [Campylobacter sputorum aubsp. sputorum RM3237]
MEEIFILGNGAMATAMAFGLKDKYSIVLVGRNRQKLENLAKQGFKTELYGDKFDINNKFIILAFKPYALDSVSQILSGKA
DLIISVLATSSLEEIKNQISSNRYIKAMPNIAAKFKSSITPFFSKDCQNEDEVILSTFGEICRVDSEDELNMAMAISGCA
PAYLALVAEAMACGCVSKGLKKDIAHSITAGVFKSISALLKESHPALIKESVCSPAGTTIEGVNVLEEHSVRSAFIKAIK
ASIDKASK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=217771 CSPUT_RS05645 WP_089182709.1 1127593..1128339(-) (proC) [Campylobacter sputorum aubsp. sputorum RM3237]
ATGGAAGAAATTTTTATACTTGGTAATGGAGCTATGGCGACTGCTATGGCTTTTGGATTAAAAGATAAATATAGCATTGT
TTTGGTTGGCAGAAACAGACAAAAATTAGAAAATTTAGCAAAACAAGGCTTTAAAACAGAGCTTTATGGAGATAAATTTG
ATATAAATAATAAATTTATAATACTAGCTTTTAAACCTTACGCTCTTGATAGTGTTAGTCAAATTTTAAGCGGAAAAGCT
GATTTGATTATAAGTGTTTTGGCTACATCTTCTCTTGAAGAGATAAAAAATCAAATTTCTTCAAATAGATATATAAAAGC
TATGCCAAATATAGCGGCTAAATTTAAATCTTCCATAACTCCTTTTTTCTCAAAAGATTGCCAAAATGAAGATGAGGTTA
TTTTATCTACATTTGGTGAAATTTGTAGAGTCGATAGTGAAGATGAGCTAAATATGGCAATGGCGATAAGTGGCTGTGCA
CCGGCGTATTTGGCTTTGGTTGCTGAAGCTATGGCTTGTGGTTGTGTTAGTAAAGGGCTTAAAAAAGATATAGCTCATAG
TATTACCGCTGGTGTTTTTAAAAGTATATCAGCCCTGCTAAAAGAATCTCATCCAGCTCTTATAAAAGAGTCTGTTTGCT
CGCCTGCTGGAACTACTATAGAAGGTGTTAATGTCTTAGAGGAGCATTCAGTAAGATCTGCTTTTATAAAAGCTATCAAA
GCAAGTATAGATAAAGCGAGTAAATAA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(147-247)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

51.452

97.177

0.5

Multiple sequence alignment