Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CXB69_RS04210 Genome accession   NZ_CP025206
Coordinates   826502..828295 (-) Length   597 a.a.
NCBI ID   WP_025016206.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0074     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 821502..833295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS04200 (CXB69_04195) - 823078..823875 (+) 798 WP_016264576.1 tyrosine-protein phosphatase -
  CXB69_RS04205 (CXB69_04200) - 824277..826325 (+) 2049 WP_035147362.1 HelD family protein -
  CXB69_RS04210 (CXB69_04205) rcrQ 826502..828295 (-) 1794 WP_025016206.1 ABC transporter ATP-binding protein Regulator
  CXB69_RS04215 (CXB69_04210) - 828299..830011 (-) 1713 WP_016264573.1 ABC transporter ATP-binding protein -
  CXB69_RS04220 (CXB69_04215) - 830154..830825 (+) 672 WP_016264572.1 TetR/AcrR family transcriptional regulator -
  CXB69_RS04225 (CXB69_04220) - 830878..832053 (-) 1176 WP_016264571.1 multidrug effflux MFS transporter -
  CXB69_RS04230 (CXB69_04225) rpsN 832374..832643 (-) 270 WP_011373976.1 30S ribosomal protein S14 -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66902.89 Da        Isoelectric Point: 5.6404

>NTDB_id=217487 CXB69_RS04210 WP_025016206.1 826502..828295(-) (rcrQ) [Latilactobacillus sakei strain WiKim0074]
MKEFKRAMVFFYHYLKRYKPSFAIILVMTVFATYLQVKAPEYIGDALNELVKYATKFQVLKAQHLPTSGASKDAFIDVIV
SLVLFYVLSSAATFVSSAAFSRVNALSTNRMRIGLFNKLQKMQIKYFDRHSDGDILSRFTSDLDNIYNAMNQVLSQLVSG
TALLIGLLIMMFRKDTQLAWVTIASVPISFILAWIIINKAQKYVNVQQDEVGKLNGYINEKITGQKVIITNSLQAETIDG
FVEHNESVRKATLKGQIYSGMIFPLMQGMSLVNTAIVIFFGSWLAVNGDIKKSVALGLVVTFVQYSQQFYNQIAQLSSSY
SMIQLAITGARRVNEVFDEDDEIRPTDGQQFNGIERSVTMEHVDFSYLPGKQILHDVNIEVDKGQMIALVGPTGSGKTTV
MNLMNRFYDVDQGAVKIDGVDIRDMDLDTLRSHVGIVLQESVLFAGTIRDNIVFGKPDATDDEVIAAAQQAHIHDFIMTL
EDGYQTKVSEEDNVFSTGQKQLISIARTIITDPALLILDEATSNVDTVTESHIQKAMENVIQGRTSFVIAHRLKTVLNAD
RIIVLKDGRIIEEGNHQELLAQEGFYAELYNNQFVFE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=217487 CXB69_RS04210 WP_025016206.1 826502..828295(-) (rcrQ) [Latilactobacillus sakei strain WiKim0074]
ATGAAAGAATTTAAACGTGCCATGGTCTTTTTCTACCATTATTTAAAACGCTATAAACCATCTTTTGCGATTATCCTTGT
GATGACCGTCTTTGCCACTTATTTACAAGTCAAGGCGCCCGAATATATTGGGGATGCACTGAATGAACTGGTTAAATACG
CCACGAAGTTTCAGGTTTTAAAAGCCCAGCATTTACCAACCAGTGGGGCTTCTAAAGATGCTTTTATTGATGTCATTGTG
TCGTTAGTCCTTTTTTATGTCTTGAGTTCAGCGGCAACCTTTGTCTCAAGCGCCGCTTTTTCACGCGTCAATGCGTTATC
GACCAACCGGATGCGGATTGGGTTATTCAATAAATTACAAAAGATGCAGATTAAATATTTTGATCGTCATTCAGATGGCG
ATATCCTCAGCCGTTTTACGAGTGATTTAGATAATATTTATAACGCGATGAACCAAGTGTTAAGTCAATTAGTGTCGGGA
ACGGCCTTGTTGATTGGTTTGTTAATTATGATGTTTAGAAAAGATACCCAATTGGCGTGGGTTACAATCGCGTCAGTGCC
AATTTCGTTTATTTTAGCGTGGATCATTATCAACAAAGCGCAAAAATACGTCAATGTGCAACAAGATGAAGTGGGTAAGT
TAAATGGTTATATCAATGAAAAAATCACAGGGCAAAAAGTGATTATTACCAACAGCCTACAAGCTGAAACAATTGACGGC
TTTGTTGAACATAATGAAAGTGTCCGGAAAGCAACCTTGAAAGGCCAAATTTATTCAGGGATGATTTTCCCATTGATGCA
AGGGATGTCACTGGTTAATACGGCGATCGTGATCTTCTTTGGGAGCTGGCTAGCGGTCAACGGGGATATCAAAAAATCCG
TTGCTTTAGGATTAGTCGTGACTTTCGTGCAATATTCACAACAATTCTATAATCAAATTGCGCAACTCTCATCAAGTTAC
AGCATGATTCAATTGGCAATTACCGGTGCGCGCCGGGTCAACGAAGTCTTTGATGAAGATGATGAAATTCGTCCAACTGA
TGGACAACAATTCAACGGAATTGAACGTTCAGTAACGATGGAACATGTTGATTTTAGTTACTTACCAGGCAAACAAATCC
TGCACGACGTGAATATTGAGGTTGATAAGGGCCAAATGATTGCGTTGGTTGGACCAACTGGCTCTGGTAAGACGACGGTC
ATGAACTTGATGAACCGGTTCTATGATGTGGATCAAGGCGCCGTTAAGATTGACGGCGTTGATATCCGTGACATGGATTT
AGACACATTGCGGTCACACGTGGGGATTGTTCTTCAAGAATCAGTCTTATTTGCAGGGACGATTCGCGATAACATCGTCT
TTGGGAAACCAGATGCGACTGATGATGAAGTGATTGCAGCGGCGCAACAAGCGCACATTCACGATTTCATCATGACGTTG
GAAGATGGCTATCAAACGAAGGTTAGCGAAGAAGACAACGTCTTTAGTACGGGTCAAAAACAATTGATCAGTATTGCGCG
GACGATTATCACGGATCCAGCGCTCTTGATTTTAGATGAAGCAACAAGTAACGTTGATACGGTGACTGAAAGCCATATCC
AAAAAGCAATGGAAAATGTGATTCAGGGACGGACCAGTTTTGTAATTGCCCATCGCTTGAAAACCGTCTTAAATGCGGAT
CGGATTATCGTCTTAAAAGATGGCCGAATTATCGAAGAAGGCAATCATCAAGAATTACTAGCACAAGAAGGCTTCTACGC
AGAATTATATAACAATCAATTTGTATTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(26-311)

ABC transporter (ABC_tran)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.632

97.99

0.379