Detailed information NTG0217427

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: CW750_RS08270
• Genome accession: NZ_CP025136
• Coordinates: 1659755..1662283 (+)
• Length: 842 a.a.
• NCBI ID: WP_056936400.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain WiKim0072
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1654755..1667283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CW750_RS08250 (CW750_08255)	-	1655397..1656695 (+)	1299	WP_016264986.1	pyrimidine-nucleoside phosphorylase	-
CW750_RS08255 (CW750_08260)	-	1656932..1658266 (+)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
CW750_RS08260 (CW750_08265)	-	1658419..1659078 (+)	660	WP_016264988.1	histidine phosphatase family protein	-
CW750_RS08265 (CW750_08270)	-	1659090..1659749 (+)	660	WP_016264989.1	tetratricopeptide repeat protein	-
CW750_RS08270 (CW750_08275)	recD/recD2/recDB	1659755..1662283 (+)	2529	WP_056936400.1	ATP-dependent RecD-like DNA helicase	Machinery gene
CW750_RS08275 (CW750_08280)	-	1662326..1663537 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
CW750_RS08280 (CW750_08285)	-	1663598..1663837 (-)	240	WP_011374513.1	hypothetical protein	-
CW750_RS08285 (CW750_08290)	-	1663840..1664934 (-)	1095	WP_129584123.1	site-specific integrase	-
CW750_RS08290 (CW750_08295)	-	1665137..1665766 (-)	630	WP_129584124.1	Ltp family lipoprotein	-
CW750_RS08295 (CW750_08300)	-	1665858..1666787 (-)	930	WP_129584125.1	hypothetical protein	-
CW750_RS08300 (CW750_08305)	-	1666871..1667281 (-)	411	WP_164994054.1	ImmA/IrrE family metallo-endopeptidase	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93311.49 Da
• Isoelectric Point: 5.0804

>NTDB_id=217427 CW750_RS08270 WP_056936400.1 1659755..1662283(+) (recD/recD2/recDB) [Latilactobacillus sakei strain WiKim0072]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDGVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKERGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPAVEKPTPAKEAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=217427 CW750_RS08270 WP_056936400.1 1659755..1662283(+) (recD/recD2/recDB) [Latilactobacillus sakei strain WiKim0072]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATTGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATCGGTCAAAAAACGGCAGAGAAGATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGATT
CAACCGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGTTGACGATTAATAATGGGATG
GAACAAATTATCATTGGCCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGGGCGGATAATT
TAGCCGAGAAAATTGGCTTTGCAGCCGATTCGCCAGCACGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACA
AATCAAGCGGGTGATACGTTCACTCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCACGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGACGGCAAAGTGGTCGGAGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCGAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGTTTTAAGATGAGCTATGATGGTGTTCAAAA
AAATGCAATCAAATTGGCGATGACGCACAGAGCCTTTCTACTAACGGGGGGCCCTGGTACGGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TTATTGGCGGCACCCACCGGGCGAGCCGCTAAACGGATGAGTGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGTTT
GTTAGGGATTACGGGCCGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCGCTGATTCGAGCGGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATTTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTC
ACTAAAGCAAAAGAACGGGGTTTTGAGACGAAGGACATTCAAGTGCTAGCACCGATGTATCGTGGGGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCGAAGGTCGATGATCGTAAGAAACAAGTTAGTTTAGGCAATGTTC
ATTACCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAATTAAACGTCTTTAACGGTGAAATTGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCATTGGTTAACCAATACCAGCGGATGCTGAAACGGAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTATTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAAGCAGCTAAGGAATTATCCGCAAACCGACAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAGGTGAGCCAAGCGGTCAAAACTGCAAGTGTTGGTTTAACGGAAGCTA
AACCGGCTGTTGAAAAGCCAACGCCGGCTAAAGAAGCGGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGAATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• AAA domain (AAA_30) (343-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418