Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   CWI26_RS07545 Genome accession   NZ_CP025043
Coordinates   1523258..1524097 (-) Length   279 a.a.
NCBI ID   WP_100881511.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1518258..1529097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS07530 (CWI26_07530) pheT 1518336..1520735 (-) 2400 WP_100881509.1 phenylalanine--tRNA ligase subunit beta -
  CWI26_RS07535 (CWI26_07535) - 1520737..1521258 (-) 522 WP_024378482.1 GNAT family N-acetyltransferase -
  CWI26_RS07540 (CWI26_07540) pheS 1521800..1522843 (-) 1044 WP_100881510.1 phenylalanine--tRNA ligase subunit alpha -
  CWI26_RS07545 (CWI26_07545) endA 1523258..1524097 (-) 840 WP_100881511.1 DNA/RNA non-specific endonuclease Machinery gene
  CWI26_RS07550 (CWI26_07550) - 1524127..1524318 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  CWI26_RS07555 (CWI26_07555) murA 1524311..1525594 (-) 1284 WP_100881512.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CWI26_RS07560 (CWI26_07560) - 1525618..1525842 (-) 225 WP_012775178.1 DUF1146 family protein -
  CWI26_RS07565 (CWI26_07565) - 1525902..1526318 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  CWI26_RS07570 (CWI26_07570) atpD 1526328..1527734 (-) 1407 WP_100881513.1 F0F1 ATP synthase subunit beta -
  CWI26_RS07575 (CWI26_07575) - 1527754..1528632 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30136.36 Da        Isoelectric Point: 6.5007

>NTDB_id=216627 CWI26_RS07545 WP_100881511.1 1523258..1524097(-) (endA) [Streptococcus suis strain AH681]
MAKKNVKKQAMSLLSLLATIVAVAGGYLLSDNKSSNVADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGHSIDWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLIYADEDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=216627 CWI26_RS07545 WP_100881511.1 1523258..1524097(-) (endA) [Streptococcus suis strain AH681]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGCAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGACTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAGGATGTTAAGAAACAGCTTGGACATTCAATTGACTGGAATGGAGCG
GGTGCTTTTATCATCAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGAGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGATCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGATTTATGCTGATGAGGATGATTTGGTTCCAGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATGAGTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

73.729

84.588

0.624
  endA Streptococcus pneumoniae D39

73.729

84.588

0.624
  endA Streptococcus pneumoniae R6

73.729

84.588

0.624
  endA Streptococcus pneumoniae TIGR4

73.729

84.588

0.624

Multiple sequence alignment