Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CWI26_RS06485 Genome accession   NZ_CP025043
Coordinates   1305576..1307312 (-) Length   578 a.a.
NCBI ID   WP_100881419.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300576..1312312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS06465 (CWI26_06465) thrB 1300577..1301437 (-) 861 WP_029188460.1 homoserine kinase -
  CWI26_RS06470 (CWI26_06470) - 1301441..1302727 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  CWI26_RS06475 (CWI26_06475) - 1302832..1303755 (+) 924 WP_100881417.1 polysaccharide deacetylase family protein -
  CWI26_RS06480 (CWI26_06480) rcrQ 1303798..1305567 (-) 1770 WP_100881418.1 ABC transporter ATP-binding protein Regulator
  CWI26_RS06485 (CWI26_06485) rcrP 1305576..1307312 (-) 1737 WP_100881419.1 ABC transporter ATP-binding protein Regulator
  CWI26_RS06490 (CWI26_06490) - 1307388..1307630 (-) 243 WP_012028079.1 KH domain-containing protein -
  CWI26_RS06495 (CWI26_06495) rpsP 1307652..1307924 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  CWI26_RS06500 (CWI26_06500) - 1308161..1309324 (+) 1164 WP_100881157.1 IS30 family transposase -
  CWI26_RS06505 (CWI26_06505) - 1309600..1309908 (-) 309 WP_024419222.1 DUF4298 domain-containing protein -
  CWI26_RS06510 (CWI26_06510) pcp 1309908..1310555 (-) 648 WP_024419223.1 pyroglutamyl-peptidase I -
  CWI26_RS06515 (CWI26_06515) - 1310552..1311307 (-) 756 WP_100881420.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65081.33 Da        Isoelectric Point: 5.1895

>NTDB_id=216620 CWI26_RS06485 WP_100881419.1 1305576..1307312(-) (rcrP) [Streptococcus suis strain AH681]
MNLIWTYLKKYPKWIALDLFGAFLFIVVNLGLPTFLARMIDQGITKNNVEQLYFWSGIMGLIVLLGIVGRVTLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVVVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQETRFAEVNEEYTETSKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALPPLKGGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKVLRSKIGFIPQKALLFTGTIAENLKYGKLDASLAELHEAADVAQARDFIESKEEQFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYRTDAILRARLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=216620 CWI26_RS06485 WP_100881419.1 1305576..1307312(-) (rcrP) [Streptococcus suis strain AH681]
ATGAATCTGATTTGGACCTATTTGAAAAAATACCCCAAGTGGATAGCTTTGGATTTGTTCGGAGCTTTCCTATTCATTGT
AGTTAACTTGGGCTTGCCGACATTTTTAGCAAGAATGATTGATCAAGGGATTACAAAAAACAATGTTGAACAATTATATT
TCTGGTCAGGAATAATGGGCTTGATTGTCTTGCTTGGTATTGTTGGCCGAGTGACACTTGCCTATGCGGCTGGACAGTTG
ACAACAAATATCGTCAAGGATATTCGAAATGATCTGTACGAAAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTTGTGGCTCGCATGACCAACGATGCTTTTGTTTTGATGCAGTTTGCGGAGATGGTATTGAAACTGG
GAATTATCACACCTTTAATGATGATTGCCTCTGTCATCATGACCTTGGTAACCAGTCCAAGTCTGGCTTGGACAGTAGCA
GTAGCCATGCCATTTTTGGTTGTTGTTATTTTCTACGTAGCCACTAAAACTCGTCCTCTTTCTGAAAAGCAACAGAAACG
ATTGGATACGATTAACCAATATGTTCGTGAAAATCTCATGGGCTTACGGGTCATTCGTGCCTTTACGCGTGAAGAGTTCC
AAGAAACTCGTTTTGCAGAGGTCAATGAAGAATATACTGAAACATCCAAAAAACTCTTTAATTTGACAGGGCTGACAGAG
CCACTATTTGTACAGATTATTATTGCCATGATAGTGGCTATTGTCTGGTTTGCCCTGCCTCCTTTGAAAGGTGGCAGTCT
GCAGATTGGGGATTTGGTAGCCTTTATCGAATACAGTTTCCACGCCCTATTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCGCGGATGTCGGTGTCCAGTCAGCGAATTCAAGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGACACTCGTGGTTATCTGGAATTTGAAAATGTTACTTTTGCCTACCCTGGCGAGACCGAGTC
GCCTGTGCTGCACAATATTTCCTTCAAAGCCAAACCAGGTGAAACGATTGCCTTTATTGGTTCGACTGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGTACTTCGTAGTAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACCATCGCGGAAAA
TCTCAAATACGGGAAGCTAGACGCGAGTTTGGCAGAGTTGCATGAGGCGGCGGATGTGGCCCAGGCCAGAGACTTTATCG
AGAGCAAGGAAGAGCAGTTTGACACCCACTTGGCAGAGGGAGGAAGTAACCTTTCAGGTGGTCAAAAGCAACGTTTGTCC
ATTGCTCGTGCCATTGTCAAGCAGCCAGATATCTATATCTTTGATGATTCCTTCTCAGCCTTGGATTATAGGACGGATGC
CATTTTGCGGGCTCGTTTGAAAGAAGTGACGGAAAATGCGACAGTGCTAATTGTTGCACAACGGGTAGGAACCATTATGG
ATGCCGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGCGGTACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGTGAAATTGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398