Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CU118_RS03420 Genome accession   NZ_CP024998
Coordinates   680575..681348 (+) Length   257 a.a.
NCBI ID   WP_054190201.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 675575..686348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS03400 (CU118_03400) trmFO 675919..677226 (+) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  CU118_RS03405 (CU118_03405) xerC 677643..678539 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  CU118_RS03410 (CU118_03410) hslV 678536..679081 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CU118_RS03415 (CU118_03415) hslU 679147..680550 (+) 1404 WP_054190202.1 ATP-dependent protease ATPase subunit HslU -
  CU118_RS03420 (CU118_03420) codY 680575..681348 (+) 774 WP_054190201.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CU118_RS03425 (CU118_03425) - 681399..681491 (+) 93 WP_031788481.1 hypothetical protein -
  CU118_RS03430 (CU118_03430) rpsB 681690..682457 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  CU118_RS03435 (CU118_03435) - 682491..682604 (+) 114 WP_001789890.1 hypothetical protein -
  CU118_RS03440 (CU118_03440) tsf 682639..683520 (+) 882 WP_000201387.1 translation elongation factor Ts -
  CU118_RS03445 (CU118_03445) pyrH 683657..684379 (+) 723 WP_000057330.1 UMP kinase -
  CU118_RS03450 (CU118_03450) frr 684398..684952 (+) 555 WP_054190200.1 ribosome recycling factor -
  CU118_RS03455 (CU118_03455) - 685325..686095 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28771.19 Da        Isoelectric Point: 6.0680

>NTDB_id=215982 CU118_RS03420 WP_054190201.1 680575..681348(+) (codY) [Staphylococcus aureus strain 55-99-44]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPTEYTERLM
EVKQTESNIDIDNALTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGMEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=215982 CU118_RS03420 WP_054190201.1 680575..681348(+) (codY) [Staphylococcus aureus strain 55-99-44]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAACTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGCATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTATGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment