Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMB_RS00320 Genome accession   NC_003112
Coordinates   66336..66710 (+) Length   124 a.a.
NCBI ID   WP_009348628.1    Uniprot ID   -
Organism   Neisseria meningitidis MC58     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 61336..71710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS00320 (NMB0057) comE 66336..66710 (+) 375 WP_009348628.1 ComEA family DNA-binding protein Machinery gene
  NMB_RS00325 (NMB0059) dnaJ 66979..68100 (+) 1122 WP_002215274.1 molecular chaperone DnaJ -
  NMB_RS00330 (NMB0060) - 68296..70314 (+) 2019 WP_002224746.1 OPT family oligopeptide transporter -
  NMB_RS00335 (NMB0061) rfbC 70358..70915 (-) 558 WP_002220108.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13444.25 Da        Isoelectric Point: 10.9392

>NTDB_id=21583 NMB_RS00320 WP_009348628.1 66336..66710(+) (comE) [Neisseria meningitidis MC58]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 375 bp        

>NTDB_id=21583 NMB_RS00320 WP_009348628.1 66336..66710(+) (comE) [Neisseria meningitidis MC58]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGGCTTCCGTCGG
CGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694

Multiple sequence alignment