Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   CVO91_RS00975 Genome accession   NZ_CP024974
Coordinates   152538..153491 (+) Length   317 a.a.
NCBI ID   WP_100664717.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147538..158491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00960 (CVO91_00960) - 148076..149386 (+) 1311 WP_100664716.1 hypothetical protein -
  CVO91_RS00965 (CVO91_00965) - 149624..150786 (+) 1163 Protein_152 IS630 family transposase -
  CVO91_RS00970 (CVO91_00970) - 150928..152133 (+) 1206 WP_052819543.1 hypothetical protein -
  CVO91_RS00975 (CVO91_00975) comGH 152538..153491 (+) 954 WP_100664717.1 class I SAM-dependent methyltransferase Machinery gene
  CVO91_RS00980 (CVO91_00980) - 153542..154729 (+) 1188 WP_100664718.1 acetate kinase -
  CVO91_RS00985 (CVO91_00985) tnpA 154916..155380 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  CVO91_RS01000 (CVO91_01000) - 155690..155824 (+) 135 Protein_157 galactose-6-phosphate isomerase subunit LacA -
  CVO91_RS01010 (CVO91_01010) - 156104..156655 (+) 552 WP_002939998.1 folate family ECF transporter S component -
  CVO91_RS01015 (CVO91_01015) - 156711..157973 (+) 1263 WP_002939999.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35802.92 Da        Isoelectric Point: 4.4183

>NTDB_id=215787 CVO91_RS00975 WP_100664717.1 152538..153491(+) (comGH) [Streptococcus suis strain CZ130302]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAE
ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=215787 CVO91_RS00975 WP_100664717.1 152538..153491(+) (comGH) [Streptococcus suis strain CZ130302]
ATGAATTTTGAAAAGATCGAACAGGCTTATGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAACATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCTTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCCATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAG
ATTTCTTTCGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG
TTACTATCCAGATGATCAGATTGCTAGCCGTTATCAGGTTGCCAGTCCAAAGGAACATACCTACGCCCACCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCTAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterProScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA159

60.443

99.685

0.603
  comGH Streptococcus mutans UA140

60.127

99.685

0.599