Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CV702_RS01215 Genome accession   NZ_CP024954
Coordinates   238120..239997 (+) Length   625 a.a.
NCBI ID   WP_017864066.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain F44     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 233120..244997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV702_RS01195 (CV702_01195) - 233316..234587 (-) 1272 WP_017864062.1 NAD(P)/FAD-dependent oxidoreductase -
  CV702_RS01200 (CV702_01200) - 234728..235555 (+) 828 WP_017864063.1 NAD(P)H-hydrate dehydratase -
  CV702_RS01205 (CV702_01205) - 235704..236117 (+) 414 WP_017864064.1 DUF1398 domain-containing protein -
  CV702_RS01210 (CV702_01210) - 236288..238123 (+) 1836 WP_017864065.1 ABC transporter ATP-binding protein -
  CV702_RS01215 (CV702_01215) rcrQ 238120..239997 (+) 1878 WP_017864066.1 ABC transporter ATP-binding protein Regulator
  CV702_RS01220 (CV702_01220) - 240094..240747 (+) 654 WP_010905251.1 YcjF family protein -
  CV702_RS01225 (CV702_01225) - 240793..241812 (-) 1020 WP_017864067.1 Gfo/Idh/MocA family oxidoreductase -
  CV702_RS11900 - 241796..241963 (-) 168 WP_003131184.1 hypothetical protein -
  CV702_RS01230 (CV702_01230) - 242151..242627 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  CV702_RS12050 - 242841..243041 (+) 201 WP_226898149.1 hypothetical protein -
  CV702_RS12055 - 243057..243305 (+) 249 Protein_236 effector binding domain-containing protein -
  CV702_RS01240 (CV702_01240) - 243370..244215 (+) 846 WP_003131189.1 aldo/keto reductase -
  CV702_RS01245 (CV702_01245) - 244381..244893 (+) 513 WP_023189990.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70279.13 Da        Isoelectric Point: 9.0375

>NTDB_id=215591 CV702_RS01215 WP_017864066.1 238120..239997(+) (rcrQ) [Lactococcus lactis subsp. lactis strain F44]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMAKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWHLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHAVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVSFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREINREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITTLPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=215591 CV702_RS01215 WP_017864066.1 238120..239997(+) (rcrQ) [Lactococcus lactis subsp. lactis strain F44]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTTCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGTGTAACAAAAAGTCTA
AAAAATCATACCGCAATTCAAATTGACATGGCTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGCCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCACTTGGCACTCGTCGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TTGCACCTTTATCGCAAAAATTCTTTGCTGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGGCATGCGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAATACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCTCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTAACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CACTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGGCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACATCCAGTGTAGATACAAGAACGGAGCGC
CTGATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAATGGAT
TATATGCCAGCCTTTATAATTCACAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-326)

ABC transporter (ABC_tran)

(404-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.809

94.88

0.387