Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CV723_RS02340 Genome accession   NZ_CP024953
Coordinates   456397..456663 (+) Length   88 a.a.
NCBI ID   WP_001173705.1    Uniprot ID   A0A8J3FT93
Organism   Helicobacter pylori strain 7.13     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451397..461663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV723_RS02320 (CV723_02320) - 453472..454252 (+) 781 Protein_433 hypothetical protein -
  CV723_RS02325 (CV723_02325) - 454271..454564 (+) 294 WP_001160321.1 hypothetical protein -
  CV723_RS02330 (CV723_02330) - 454571..456097 (+) 1527 WP_000323325.1 hypothetical protein -
  CV723_RS02335 (CV723_02335) - 456094..456396 (+) 303 WP_000850076.1 hypothetical protein -
  CV723_RS02340 (CV723_02340) comB3 456397..456663 (+) 267 WP_001173705.1 hypothetical protein Machinery gene
  CV723_RS02345 (CV723_02345) - 456710..459078 (+) 2369 Protein_438 VirB4 family type IV secretion/conjugal transfer ATPase -
  CV723_RS02350 (CV723_02350) - 459081..461114 (+) 2034 WP_000655395.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10162.98 Da        Isoelectric Point: 4.8782

>NTDB_id=215548 CV723_RS02340 WP_001173705.1 456397..456663(+) (comB3) [Helicobacter pylori strain 7.13]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=215548 CV723_RS02340 WP_001173705.1 456397..456663(+) (comB3) [Helicobacter pylori strain 7.13]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8J3FT93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment