Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CV724_RS05905 Genome accession   NZ_CP024952
Coordinates   1220626..1220886 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain B125A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1215626..1225886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS08380 - 1216060..1216188 (-) 129 WP_000769068.1 hypothetical protein -
  CV724_RS05895 (CV724_05915) - 1216188..1218122 (-) 1935 WP_145727514.1 type IA DNA topoisomerase -
  CV724_RS05900 (CV724_05920) - 1218115..1220613 (-) 2499 WP_145727258.1 VirB4 family type IV secretion system protein -
  CV724_RS05905 (CV724_05925) comB3 1220626..1220886 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  CV724_RS05910 (CV724_05930) - 1220887..1221189 (-) 303 WP_145727259.1 TrbC/VirB2 family protein -
  CV724_RS05915 (CV724_05935) - 1221179..1223095 (-) 1917 WP_145727260.1 toprim domain-containing protein -
  CV724_RS05920 (CV724_05940) - 1223106..1223870 (-) 765 WP_145727261.1 hypothetical protein -
  CV724_RS05925 (CV724_05945) - 1223892..1224071 (-) 180 WP_145727262.1 hypothetical protein -
  CV724_RS05930 (CV724_05950) - 1224061..1224846 (-) 786 WP_145727263.1 hypothetical protein -
  CV724_RS05935 (CV724_05955) - 1224846..1225227 (-) 382 Protein_1140 DUF1294 domain-containing protein -
  CV724_RS05945 (CV724_05965) - 1225536..1225802 (-) 267 WP_108288949.1 lysozyme -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=215522 CV724_RS05905 WP_000602756.1 1220626..1220886(-) (comB3) [Helicobacter pylori strain B125A]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=215522 CV724_RS05905 WP_000602756.1 1220626..1220886(-) (comB3) [Helicobacter pylori strain B125A]
ATGATTTTAAATTATGTGGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTGTATGGCGTGGTGCTATTGGTAGCATTAA
TAACAATGTTTTACATACTGGAATTTTTTGATGAAGACATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment