Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ6_RS04975 Genome accession   NZ_CP019407
Coordinates   1029727..1030332 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Borreze str. SA20041063     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024727..1035332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ6_RS04955 (LFZ6_04955) - 1025116..1026876 (-) 1761 WP_000156447.1 Lon protease family protein -
  LFZ6_RS04960 (LFZ6_04960) matP 1027062..1027514 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ6_RS04965 (LFZ6_04965) ompA 1027586..1028644 (-) 1059 WP_076938359.1 porin OmpA -
  LFZ6_RS04970 (LFZ6_04970) sulA 1029001..1029510 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ6_RS04975 (LFZ6_04975) sxy/tfoX 1029727..1030332 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ6_RS04980 (LFZ6_04980) yccS 1030319..1032472 (-) 2154 WP_000950862.1 YccS family putative transporter -
  LFZ6_RS04985 (LFZ6_04985) - 1032491..1032937 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ6_RS04990 (LFZ6_04990) helD 1033061..1035115 (+) 2055 WP_000420499.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215360 LFZ6_RS04975 WP_001202375.1 1029727..1030332(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Borreze str. SA20041063]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215360 LFZ6_RS04975 WP_001202375.1 1029727..1030332(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Borreze str. SA20041063]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment