Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CV728_RS04105 Genome accession   NZ_CP024948
Coordinates   845261..845521 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain B140     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 840261..850521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV728_RS04085 (CV728_04100) - 840519..842168 (-) 1650 WP_145817255.1 LeoA/HP0731 family dynamin-like GTPase -
  CV728_RS04090 (CV728_04105) - 842276..843040 (+) 765 WP_145817257.1 hypothetical protein -
  CV728_RS04095 (CV728_04110) - 843052..844968 (+) 1917 WP_145817259.1 toprim domain-containing protein -
  CV728_RS04100 (CV728_04115) - 844958..845260 (+) 303 WP_000649842.1 TrbC/VirB2 family protein -
  CV728_RS04105 (CV728_04120) comB3 845261..845521 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  CV728_RS04110 (CV728_04125) - 845534..848032 (+) 2499 WP_145817261.1 VirB4 family type IV secretion system protein -
  CV728_RS04115 (CV728_04130) - 848025..849959 (+) 1935 WP_145818275.1 type IA DNA topoisomerase -
  CV728_RS08810 - 849959..850087 (+) 129 WP_265473275.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=215341 CV728_RS04105 WP_000602756.1 845261..845521(+) (comB3) [Helicobacter pylori strain B140]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=215341 CV728_RS04105 WP_000602756.1 845261..845521(+) (comB3) [Helicobacter pylori strain B140]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453