Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AJGP001_RS07380 Genome accession   NZ_CP019401
Coordinates   1482239..1484656 (+) Length   805 a.a.
NCBI ID   WP_071154362.1    Uniprot ID   -
Organism   Planococcus faecalis strain AJ003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477239..1489656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJGP001_RS07360 (AJGP001_07395) - 1478846..1479262 (+) 417 WP_058385603.1 Rrf2 family transcriptional regulator -
  AJGP001_RS07365 (AJGP001_07400) - 1479278..1480411 (+) 1134 WP_071154360.1 cysteine desulfurase family protein -
  AJGP001_RS07370 (AJGP001_07405) mnmA 1480425..1481540 (+) 1116 WP_078080328.1 tRNA 2-thiouridine(34) synthase MnmA -
  AJGP001_RS07375 (AJGP001_07410) - 1481555..1482214 (+) 660 WP_071154361.1 tetratricopeptide repeat protein -
  AJGP001_RS07380 (AJGP001_07415) recD2 1482239..1484656 (+) 2418 WP_071154362.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AJGP001_RS07385 (AJGP001_07420) alaS 1485203..1487827 (+) 2625 WP_078080330.1 alanine--tRNA ligase -
  AJGP001_RS07390 (AJGP001_07425) - 1487917..1488183 (+) 267 WP_058386921.1 IreB family regulatory phosphoprotein -
  AJGP001_RS07395 (AJGP001_07430) ruvX 1488186..1488602 (+) 417 WP_058385597.1 Holliday junction resolvase RuvX -
  AJGP001_RS07400 (AJGP001_07435) - 1488616..1488924 (+) 309 WP_058385596.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 89842.98 Da        Isoelectric Point: 5.0892

>NTDB_id=215245 AJGP001_RS07380 WP_071154362.1 1482239..1484656(+) (recD2) [Planococcus faecalis strain AJ003]
MTGQIDLFQEEKQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTPYTEKEIIVSGYFPMLTLEEQYRFTGVVKNHPRYGVQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPDALDKVPRLSDDKKDTIRATLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIEILTKNPFQLIEEIEGIGFQRADELGTKLGITGSHPDRIKAAILHILNQAS
LSEGHVYVDAKTLIPLVKEMLESRQQGEIAIEAISKAAIELNEESKVAGEETRLYLPSLYYSEVGIATKLETLLAEQENR
TKFPSSEVRKALGEAEERLGVNYAETQVDAIENSINSSVMILTGGPGTGKTTVVRGLVEIYAELHGLSLDPKEYAKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQASGSSIIELAHQMKNGQLPEDITVKTADRSFIKAGADQIPAVVEK
VVRSALSKGHSIKDIQVLAPMYKGPAGIDALNRLIQEMVNPNPDGKRKELAFGDITYRIGDKVLQLVNQPESNVFNGDMG
EIVAIMKAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
RDFLILCGDPSVFRYGVERTDDAQRMTTLKSRLAVTTEQPKTEQQTKQQVETEQSGPVSLTAENVHAIHPMIGMEGITPQ
KFMEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=215245 AJGP001_RS07380 WP_071154362.1 1482239..1484656(+) (recD2) [Planococcus faecalis strain AJ003]
ATGACCGGACAAATCGATTTATTTCAAGAAGAAAAACAGTTTGTATTAGGGCGTCCTGTCGTCTCGATTTTTCACAATCC
TCAAAACTTATTCTCCATAGCCAAAGTGAAAATTCAAGAAACCAACACCCCGTACACTGAAAAAGAAATTATTGTATCTG
GCTATTTTCCGATGTTAACGCTCGAAGAACAGTATCGTTTTACAGGCGTCGTGAAAAATCATCCGCGTTATGGTGTTCAA
TTCCAAGTAGAAACGTTTACGAAAGAAGTACCAGAAACCGAACAAGGAATTATTCATTACTTGTCCAGTGATATGTTTAA
TGGCATTGGCCGGAAAACAGCAGAAACAATCGTCAAAAAACTCGGCAAAGATGCGATTAAGAAAATTCTTGAAGACCCTG
ATGCATTAGATAAAGTGCCGCGGTTGTCAGATGATAAAAAAGACACCATTCGCGCGACTTTACAGATGAATCTCGGTCTG
GAGCGTGTGATGATTCAGCTCAACGACTGGGGCTTTGGCCCTCAAGTGGGCATGCGTATTTATCAAGCTTACCGCGAAGA
AACCATTGAAATTTTGACGAAAAATCCCTTCCAGCTGATTGAAGAAATCGAAGGAATCGGTTTTCAACGTGCCGACGAAC
TCGGAACCAAGCTTGGCATCACTGGCAGTCATCCGGACCGAATCAAAGCGGCAATTTTGCACATTCTGAACCAAGCTTCT
CTGTCTGAAGGCCATGTCTATGTAGACGCTAAAACCTTGATTCCGCTAGTTAAGGAAATGCTCGAATCACGTCAGCAAGG
AGAAATTGCGATTGAAGCGATTTCGAAAGCCGCTATCGAATTAAATGAAGAAAGTAAAGTCGCAGGCGAAGAAACGCGGC
TTTATTTGCCATCGCTGTATTATTCAGAAGTTGGAATTGCGACGAAACTGGAAACTTTACTGGCCGAACAAGAAAATCGC
ACAAAGTTTCCAAGTTCAGAAGTTCGTAAAGCGCTTGGTGAAGCAGAGGAACGTCTTGGTGTGAATTATGCAGAAACGCA
AGTTGACGCGATTGAAAACAGTATTAATTCATCGGTCATGATTTTAACGGGTGGACCGGGTACCGGTAAGACCACGGTTG
TCCGCGGATTGGTGGAAATCTATGCAGAACTGCACGGGTTGTCACTCGATCCGAAAGAATACGCCAAGAAAAAAGAGCCG
TTTCCCATTATCCTAGCAGCACCAACGGGACGTGCGGCCAAGCGCTTGAGTGAATCCACTGACCTACCGGCAATGACAAT
CCACCGTTTATTAGGCTTTAATGGCCAAGAAAAAGACGAAGAAACCGAAAAAGAAATCGAAGGCAAATTAATTATTATCG
ATGAAATGTCGATGGTTGATACGTGGCTTGCTCATCAACTGCTAAAAGCAGTACCAGAAGACGCACAGCTAATTTTCGTT
GGAGACCAAGATCAATTGCCGCCGGTTGGTCCCGGACAAGTGCTAAGAGATTTACTCGAATCAAAACGGATTCCAACTGT
TGAGCTAACCGATATTTACCGACAAGCGTCAGGTTCCTCCATCATTGAACTCGCCCATCAAATGAAAAATGGACAATTGC
CTGAAGACATCACTGTAAAGACGGCCGATCGTTCATTTATCAAAGCGGGAGCCGACCAAATTCCTGCTGTTGTTGAAAAA
GTTGTGAGGAGTGCCTTGTCGAAAGGTCATTCGATTAAAGACATCCAAGTGCTTGCTCCGATGTATAAAGGACCAGCTGG
AATCGATGCTTTGAACCGTCTGATTCAAGAAATGGTCAACCCGAATCCGGATGGCAAACGAAAAGAATTAGCATTTGGTG
ACATTACGTACCGCATTGGCGATAAAGTGTTGCAGCTCGTCAATCAACCAGAAAGCAATGTCTTTAATGGTGACATGGGT
GAAATTGTCGCTATTATGAAAGCCAAAGAAACCGTTGAAAAACAAGACATGTTAGTAGCATCTTTTGATGGCATTGAAGT
AACTTATGAACGTAGCGATTTAAACCAACTCACGCTAGCGTACTGTTGTTCAATCCATAAGTCACAAGGATCTGAATTTC
CAACCGTCATCATGCCAGTAGTTCGGGGCTACATGAAAATGTTGCGCCGCAATTTGCTTTACACGGGCATTACCCGGAGT
AGGGATTTTCTTATTCTCTGTGGAGATCCAAGCGTCTTCCGTTACGGAGTTGAACGCACGGACGACGCACAGCGCATGAC
CACATTAAAAAGCCGTCTAGCGGTCACAACCGAACAACCAAAAACCGAACAACAAACAAAGCAACAAGTCGAGACAGAAC
AGAGCGGTCCCGTCAGTTTAACTGCCGAAAATGTCCACGCCATCCATCCAATGATTGGCATGGAAGGCATTACTCCACAA
AAGTTTATGGAAGCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-550)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.14

99.13

0.557

Multiple sequence alignment