Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SP_RS13505 Genome accession   NC_003028
Coordinates   1827828..1828859 (-) Length   343 a.a.
NCBI ID   WP_000506419.1    Uniprot ID   A0A0H2URM4
Organism   Streptococcus pneumoniae TIGR4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822828..1833859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP_RS09600 (SP_1909) - 1822913..1823674 (-) 762 WP_001107746.1 SDR family NAD(P)-dependent oxidoreductase -
  SP_RS09605 (SP_1910) ytpR 1823716..1824342 (-) 627 WP_000578285.1 YtpR family tRNA-binding protein -
  SP_RS09610 (SP_1911) - 1824358..1824675 (-) 318 WP_000615765.1 thioredoxin family protein -
  SP_RS09615 (SP_1912) - 1824672..1824971 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  SP_RS13690 - 1825065..1825196 (+) 132 WP_001811306.1 hypothetical protein -
  SP_RS13500 - 1825221..1825301 (-) 81 WP_223200463.1 hypothetical protein -
  SP_RS09625 - 1825308..1825499 (-) 192 WP_000291826.1 cell wall-binding protein -
  SP_RS09630 (SP_1914) - 1825660..1826334 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  SP_RS09635 (SP_1915) - 1826340..1826786 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  SP_RS09640 (SP_1916) - 1826900..1827403 (-) 504 WP_000800931.1 phosphatase PAP2 family protein -
  SP_RS09645 (SP_1917) - 1827400..1827762 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  SP_RS13505 (SP_1918) rcrQ 1827828..1828859 (-) 1032 WP_000506419.1 ABC transporter ATP-binding protein/permease Regulator
  SP_RS13510 (SP_1919) rcrP 1828866..1829687 (-) 822 WP_000601684.1 ABC transporter permease Regulator
  SP_RS09660 (SP_1920) - 1829704..1830175 (-) 472 Protein_1823 MarR family winged helix-turn-helix transcriptional regulator -
  SP_RS09665 (SP_1922) - 1830299..1831015 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SP_RS09670 (SP_1923) ply 1831896..1833311 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  SP_RS09675 (SP_1924) - 1833322..1833732 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38006.27 Da        Isoelectric Point: 4.5262

>NTDB_id=21498 SP_RS13505 WP_000506419.1 1827828..1828859(-) (rcrQ) [Streptococcus pneumoniae TIGR4]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVR
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=21498 SP_RS13505 WP_000506419.1 1827828..1828859(-) (rcrQ) [Streptococcus pneumoniae TIGR4]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAAGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.572

100

0.379

Multiple sequence alignment