Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BWZ32_RS02625 Genome accession   NZ_CP019320
Coordinates   531139..531849 (-) Length   236 a.a.
NCBI ID   WP_204250596.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2014DJH     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526139..536849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWZ32_RS02595 (BWZ32_02590) gspL 526323..527522 (+) 1200 WP_043920924.1 type II secretion system protein GspL -
  BWZ32_RS02600 (BWZ32_02595) - 527530..528021 (+) 492 WP_011078935.1 type II secretion system protein M -
  BWZ32_RS02605 (BWZ32_02600) - 528023..528784 (+) 762 WP_011078934.1 type II secretion system protein N -
  BWZ32_RS02610 (BWZ32_02605) cysQ 528912..529739 (-) 828 WP_011078933.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BWZ32_RS02615 (BWZ32_02610) nudE 529754..530308 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  BWZ32_RS02620 (BWZ32_02615) nfuA 530424..531008 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  BWZ32_RS02625 (BWZ32_02620) comF 531139..531849 (-) 711 WP_204250596.1 ComF family protein Machinery gene
  BWZ32_RS02630 (BWZ32_02625) bioH 531938..532705 (+) 768 WP_013572568.1 pimeloyl-ACP methyl ester esterase BioH -
  BWZ32_RS02635 (BWZ32_02630) - 532843..533313 (+) 471 WP_011078928.1 hypothetical protein -
  BWZ32_RS02640 (BWZ32_02635) - 533397..535721 (-) 2325 WP_101956622.1 Tex family protein -
  BWZ32_RS02645 (BWZ32_02640) greB 535957..536439 (+) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27291.09 Da        Isoelectric Point: 9.7910

>NTDB_id=214821 BWZ32_RS02625 WP_204250596.1 531139..531849(-) (comF) [Vibrio vulnificus strain VV2014DJH]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCLHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGTFRLNRSALPYAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=214821 BWZ32_RS02625 WP_204250596.1 531139..531849(-) (comF) [Vibrio vulnificus strain VV2014DJH]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCTGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCACAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTATTGCCTCACGCCGTAT
CGCTTTCCAGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGCCAGCGCAACTTAGCGGGTACTTTTCGCCTCAATCGCTCGGC
TTTACCCTATGCGATTCCCAAGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.983

99.153

0.555
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment