Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC53_RS15385 Genome accession   NZ_CP019290
Coordinates   3102405..3103115 (+) Length   236 a.a.
NCBI ID   WP_118894030.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_053     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3097405..3108115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS15365 (FORC53_2824) greB 3097815..3098297 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  FORC53_RS15370 (FORC53_2825) - 3098533..3100857 (+) 2325 WP_118894028.1 Tex family protein -
  FORC53_RS15375 (FORC53_2826) - 3100941..3101411 (-) 471 WP_011078928.1 hypothetical protein -
  FORC53_RS15380 (FORC53_2827) bioH 3101549..3102316 (-) 768 WP_118894029.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC53_RS15385 (FORC53_2828) comF 3102405..3103115 (+) 711 WP_118894030.1 ComF family protein Machinery gene
  FORC53_RS15390 (FORC53_2829) nfuA 3103246..3103830 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FORC53_RS15395 (FORC53_2830) nudE 3103946..3104500 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  FORC53_RS15400 (FORC53_2831) cysQ 3104515..3105342 (+) 828 WP_045596122.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC53_RS15405 (FORC53_2832) - 3105469..3106230 (-) 762 WP_118894031.1 type II secretion system protein N -
  FORC53_RS15410 (FORC53_2833) - 3106232..3106723 (-) 492 WP_011078935.1 type II secretion system protein M -
  FORC53_RS15415 (FORC53_2834) gspL 3106731..3107930 (-) 1200 WP_118894032.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27206.97 Da        Isoelectric Point: 9.6641

>NTDB_id=214607 FORC53_RS15385 WP_118894030.1 3102405..3103115(+) (comF) [Vibrio vulnificus strain FORC_053]
MLTDWLSEKILRSLPRLCHLCGLPMNHDPHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLALLLIQRIDHPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=214607 FORC53_RS15385 WP_118894030.1 3102405..3103115(+) (comF) [Vibrio vulnificus strain FORC_053]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCCTCACCCGCTTTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCCCTTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGTTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACAGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment