Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   SERP_RS05510 Genome accession   NC_002976
Coordinates   1149143..1150210 (-) Length   355 a.a.
NCBI ID   WP_001831131.1    Uniprot ID   A0A9Q5JLH5
Organism   Staphylococcus epidermidis RP62A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144143..1155210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SERP_RS05480 (SE1101) gcvPA 1144334..1145680 (-) 1347 WP_002456181.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SERP_RS05485 (SE1102) gcvT 1145700..1146791 (-) 1092 WP_001831107.1 glycine cleavage system aminomethyltransferase GcvT -
  SERP_RS05490 (SE1103) - 1147009..1147521 (-) 513 WP_002440040.1 shikimate kinase -
  SERP_RS05495 (SE1104) - 1147686..1148177 (-) 492 WP_002440043.1 competence type IV pilus minor pilin ComGF -
  SERP_RS12775 (SE1105) - 1148101..1148394 (-) 294 WP_001831116.1 hypothetical protein -
  SERP_RS05500 (SE1106) comGD 1148381..1148818 (-) 438 WP_001831025.1 competence type IV pilus minor pilin ComGD -
  SERP_RS05505 (SE1107) comGC 1148808..1149125 (-) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  SERP_RS05510 (SE1108) comGB 1149143..1150210 (-) 1068 WP_001831131.1 competence type IV pilus assembly protein ComGB Machinery gene
  SERP_RS05515 (SE1109) comGA 1150182..1151156 (-) 975 WP_001831109.1 competence type IV pilus ATPase ComGA Machinery gene
  SERP_RS05520 (SE1110) - 1151213..1151836 (-) 624 WP_001831016.1 MBL fold metallo-hydrolase -
  SERP_RS05525 (SE1111) - 1151836..1152162 (-) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  SERP_RS05530 (SE1112) - 1152162..1153148 (-) 987 WP_001831113.1 ROK family glucokinase -
  SERP_RS05535 (SE1113) - 1153148..1153348 (-) 201 WP_001831138.1 YqgQ family protein -
  SERP_RS05540 (SE1114) - 1153332..1154792 (-) 1461 WP_001832757.1 rhomboid family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42379.68 Da        Isoelectric Point: 10.1702

>NTDB_id=21412 SERP_RS05510 WP_001831131.1 1149143..1150210(-) (comGB) [Staphylococcus epidermidis RP62A]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVRIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=21412 SERP_RS05510 WP_001831131.1 1149143..1150210(-) (comGB) [Staphylococcus epidermidis RP62A]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCGTATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.719

100

0.499
  comGB Staphylococcus aureus N315

49.719

100

0.499

Multiple sequence alignment