Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS374_RS03405 Genome accession   NZ_CP024598
Coordinates   733538..734278 (-) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   Q7MXL6
Organism   Porphyromonas gingivalis strain KCOM 2798     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 728538..739278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS374_RS11055 - 729019..729159 (+) 141 WP_021663364.1 hypothetical protein -
  CS374_RS03390 (CS374_03355) - 729341..730243 (+) 903 WP_054191317.1 nucleotidyltransferase -
  CS374_RS03395 (CS374_03360) - 730262..732331 (+) 2070 WP_099841233.1 M13 family metallopeptidase -
  CS374_RS03400 (CS374_03365) - 732565..733467 (+) 903 WP_012457521.1 IS982-like element IS195 family transposase -
  CS374_RS03405 (CS374_03370) comF 733538..734278 (-) 741 WP_005875257.1 ComF family protein Machinery gene
  CS374_RS03410 (CS374_03375) - 734262..734747 (-) 486 WP_077085493.1 regulatory protein RecX -
  CS374_RS03415 (CS374_03380) prmC 734744..735625 (-) 882 WP_097530159.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS374_RS03420 (CS374_03385) ribD 735650..736642 (+) 993 WP_099841234.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS374_RS11060 - 736726..736887 (+) 162 WP_232525156.1 hypothetical protein -
  CS374_RS03425 (CS374_03390) aspS 737073..739214 (+) 2142 WP_097530158.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=213399 CS374_RS03405 WP_005875257.1 733538..734278(-) (comF) [Porphyromonas gingivalis strain KCOM 2798]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=213399 CS374_RS03405 WP_005875257.1 733538..734278(-) (comF) [Porphyromonas gingivalis strain KCOM 2798]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MXL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment