Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC54_RS00605 Genome accession   NZ_CP019121
Coordinates   130085..130795 (-) Length   236 a.a.
NCBI ID   WP_180981857.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125085..135795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS00575 (FORC54_0100) gspL 125280..126479 (+) 1200 WP_101958223.1 type II secretion system protein GspL -
  FORC54_RS00580 (FORC54_0101) - 126487..126978 (+) 492 WP_038941658.1 type II secretion system protein M -
  FORC54_RS00585 (FORC54_0102) - 126980..127741 (+) 762 WP_038969867.1 type II secretion system protein N -
  FORC54_RS00590 (FORC54_0103) cysQ 127858..128685 (-) 828 WP_101958224.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC54_RS00595 (FORC54_0104) nudE 128700..129254 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  FORC54_RS00600 (FORC54_0105) nfuA 129370..129954 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FORC54_RS00605 (FORC54_0106) comF 130085..130795 (-) 711 WP_180981857.1 ComF family protein Machinery gene
  FORC54_RS00610 (FORC54_0107) bioH 130884..131651 (+) 768 WP_101958225.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC54_RS00615 (FORC54_0108) - 131789..132259 (+) 471 WP_011078928.1 hypothetical protein -
  FORC54_RS00620 (FORC54_0109) - 132338..134662 (-) 2325 WP_101958226.1 Tex family protein -
  FORC54_RS00625 (FORC54_0111) greB 134898..135380 (+) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27306.04 Da        Isoelectric Point: 9.6760

>NTDB_id=213316 FORC54_RS00605 WP_180981857.1 130085..130795(-) (comF) [Vibrio vulnificus strain FORC_054]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCRHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHSIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=213316 FORC54_RS00605 WP_180981857.1 130085..130795(-) (comF) [Vibrio vulnificus strain FORC_054]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCGGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CATTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAACAGCGTCAGCGCAATTTAGCTGGTGCTTTTCGCCTCAATCGCTCAGC
GCTGCCCCATTCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment