Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   CS546_RS10450 Genome accession   NZ_CP024593
Coordinates   2289101..2290405 (+) Length   434 a.a.
NCBI ID   WP_232522064.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2804     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2284101..2295405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS546_RS12055 - 2284321..2284749 (-) 429 WP_232526402.1 hypothetical protein -
  CS546_RS10430 (CS546_10365) murQ 2285085..2285909 (-) 825 WP_099811346.1 N-acetylmuramic acid 6-phosphate etherase -
  CS546_RS10435 (CS546_10370) - 2285902..2286753 (-) 852 WP_099811347.1 BadF/BadG/BcrA/BcrD ATPase family protein -
  CS546_RS10440 (CS546_10375) - 2286750..2288210 (-) 1461 WP_077094836.1 sodium:solute symporter -
  CS546_RS10445 (CS546_10380) - 2288559..2289017 (+) 459 WP_004584424.1 hypothetical protein -
  CS546_RS10450 (CS546_10385) rarA 2289101..2290405 (+) 1305 WP_232522064.1 replication-associated recombination protein A Machinery gene
  CS546_RS10455 (CS546_10390) - 2290431..2291198 (+) 768 WP_099811349.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CS546_RS10460 (CS546_10395) rpoN 2291162..2292619 (-) 1458 WP_005873663.1 RNA polymerase factor sigma-54 -
  CS546_RS10465 (CS546_10400) murF 2292613..2293917 (-) 1305 WP_099811856.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  CS546_RS10470 (CS546_10405) panD 2294127..2294483 (+) 357 WP_010956218.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 48316.12 Da        Isoelectric Point: 5.3521

>NTDB_id=213260 CS546_RS10450 WP_232522064.1 2289101..2290405(+) (rarA) [Porphyromonas gingivalis strain KCOM 2804]
MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLNPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAESLDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAADT
SFWTPQMHTVHEAKLGERMKRWWKREKPQKDTAE

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=213260 CS546_RS10450 WP_232522064.1 2289101..2290405(+) (rarA) [Porphyromonas gingivalis strain KCOM 2804]
ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATC
GGGGGCTGTGCTCCGGCAGATGATCGAGCAGGGACAGACGCCATCCATGATTCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTCAGCTCCGGTGTGAAAGAA
GTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGA
CGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCACTTCTGGCAGCCGTAGAGCGAGGAATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAACCCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCACGAAAGCTGCTGAACATCCTTGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATCCGTCAGCGCTTGCAAGAAAACCCCGCAGCTTTCGACAAGGGAGGC
GAGCTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGG
CTAATCCGAATGCCATGCTTATCGCCATGGCCTGTGCCGAGTCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACCTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTATAAATACTCGCATGATTTTCCGGAGCACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTGACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ACCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-255)

MgsA AAA+ ATPase C terminal (MgsA_C)

(256-423)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(10-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.953

98.618

0.394

Multiple sequence alignment