Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   CS058_RS28380 Genome accession   NZ_CP024477
Coordinates   5955843..5956367 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 12939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5950843..5961367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS28365 aroB 5951959..5953065 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  CS058_RS28370 aroK 5953115..5953633 (-) 519 WP_003095833.1 shikimate kinase AroK -
  CS058_RS28375 pilQ 5953645..5955789 (-) 2145 WP_099887720.1 type 4a pilus secretin PilQ Machinery gene
  CS058_RS28380 comL/pilP 5955843..5956367 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  CS058_RS28385 pilO 5956364..5956987 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  CS058_RS28390 pilN 5956984..5957580 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  CS058_RS28395 pilM 5957580..5958644 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  CS058_RS28400 - 5958829..5961300 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=212991 CS058_RS28380 WP_003095836.1 5955843..5956367(-) (comL/pilP) [Pseudomonas aeruginosa strain 12939]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=212991 CS058_RS28380 WP_003095836.1 5955843..5956367(-) (comL/pilP) [Pseudomonas aeruginosa strain 12939]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment