Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS058_RS25680 Genome accession   NZ_CP024477
Coordinates   5366018..5366443 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 12939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5361018..5371443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS25665 pilX 5361582..5362169 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  CS058_RS25670 pilY1 5362181..5365672 (+) 3492 WP_023111845.1 type 4a pilus biogenesis protein PilY1 -
  CS058_RS25675 pilY2 5365674..5366021 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  CS058_RS25680 comF 5366018..5366443 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  CS058_RS25685 ispH 5366490..5367434 (-) 945 WP_034024704.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CS058_RS25690 fkpB 5367520..5367960 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  CS058_RS25695 lspA 5367953..5368462 (-) 510 WP_003110420.1 signal peptidase II -
  CS058_RS25700 ileS 5368455..5371286 (-) 2832 WP_034024707.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=212985 CS058_RS25680 WP_003094721.1 5366018..5366443(+) (comF) [Pseudomonas aeruginosa strain 12939]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=212985 CS058_RS25680 WP_003094721.1 5366018..5366443(+) (comF) [Pseudomonas aeruginosa strain 12939]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAAAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment