Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BVH55_RS08455 Genome accession   NZ_CP019040
Coordinates   1619740..1620519 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain GH1-13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614740..1625519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH55_RS08435 (BVH55_08455) trmFO 1615427..1616734 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BVH55_RS08440 (BVH55_08460) xerC 1616804..1617721 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  BVH55_RS08445 (BVH55_08465) hslV 1617737..1618282 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  BVH55_RS08450 (BVH55_08470) hslU 1618290..1619702 (+) 1413 WP_255219919.1 HslU--HslV peptidase ATPase subunit -
  BVH55_RS08455 (BVH55_08475) codY 1619740..1620519 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BVH55_RS08460 (BVH55_08480) flgB 1620872..1621261 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BVH55_RS08465 (BVH55_08485) flgC 1621261..1621713 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  BVH55_RS08470 (BVH55_08490) fliE 1621724..1622044 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BVH55_RS08475 (BVH55_08495) fliF 1622087..1623697 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  BVH55_RS08480 (BVH55_08500) fliG 1623710..1624726 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BVH55_RS08485 (BVH55_08505) fliH 1624719..1625474 (+) 756 WP_077722194.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=212747 BVH55_RS08455 WP_003154263.1 1619740..1620519(+) (codY) [Bacillus velezensis strain GH1-13]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=212747 BVH55_RS08455 WP_003154263.1 1619740..1620519(+) (codY) [Bacillus velezensis strain GH1-13]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment