Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | BEI53_RS17895 | Genome accession | NZ_CP018935 |
| Coordinates | 3275915..3276694 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus cereus strain JEM-2 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3237090..3311017 | 3275915..3276694 | within | 0 |
Gene organization within MGE regions
Location: 3237090..3311017
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEI53_RS17705 | rsmB | 3237248..3238582 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| BEI53_RS17710 | rlmN | 3238587..3239675 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| BEI53_RS17715 | - | 3239680..3240432 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| BEI53_RS17720 | prkC | 3240441..3242414 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| BEI53_RS17725 | rsgA | 3242683..3243564 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| BEI53_RS17730 | rpe | 3243567..3244211 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| BEI53_RS17735 | - | 3244311..3244991 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| BEI53_RS17740 | spoVM | 3245058..3245138 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| BEI53_RS17745 | rpmB | 3245212..3245400 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| BEI53_RS17750 | - | 3245779..3246141 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| BEI53_RS17755 | - | 3246164..3247840 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| BEI53_RS17760 | recG | 3248130..3250178 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| BEI53_RS17765 | fapR | 3250267..3250860 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| BEI53_RS17770 | plsX | 3250857..3251849 (+) | 993 | WP_000684110.1 | phosphate acyltransferase PlsX | - |
| BEI53_RS17775 | fabD | 3251864..3252808 (+) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| BEI53_RS17780 | fabG | 3252808..3253548 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| BEI53_RS17785 | acpP | 3253618..3253851 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| BEI53_RS17790 | rncS | 3253910..3254647 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| BEI53_RS17795 | smc | 3254794..3258363 (+) | 3570 | WP_075396456.1 | chromosome segregation protein SMC | - |
| BEI53_RS17800 | ftsY | 3258379..3259368 (+) | 990 | WP_000007649.1 | signal recognition particle-docking protein FtsY | - |
| BEI53_RS17805 | - | 3259503..3259835 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| BEI53_RS17810 | ffh | 3259848..3261197 (+) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| BEI53_RS17815 | rpsP | 3261298..3261570 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| BEI53_RS17820 | - | 3261585..3261812 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| BEI53_RS17825 | rimM | 3261933..3262448 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| BEI53_RS17830 | trmD | 3262448..3263182 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BEI53_RS17835 | rplS | 3263329..3263673 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| BEI53_RS17840 | lepB | 3263775..3264326 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| BEI53_RS17845 | ylqF | 3264347..3265237 (+) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| BEI53_RS17850 | rnhB | 3265289..3266062 (+) | 774 | WP_001174714.1 | ribonuclease HII | - |
| BEI53_RS17855 | sucC | 3266256..3267416 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| BEI53_RS17860 | sucD | 3267436..3268338 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| BEI53_RS17865 | dprA | 3268426..3269295 (+) | 870 | WP_000818032.1 | DNA-processing protein DprA | - |
| BEI53_RS17870 | topA | 3269440..3271518 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| BEI53_RS17875 | trmFO | 3271569..3272873 (+) | 1305 | WP_001991958.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| BEI53_RS17880 | xerC | 3272939..3273838 (+) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| BEI53_RS17885 | hslV | 3273881..3274423 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| BEI53_RS17890 | hslU | 3274446..3275837 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| BEI53_RS17895 | codY | 3275915..3276694 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| BEI53_RS17900 | rpsB | 3277046..3277747 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| BEI53_RS17905 | tsf | 3277851..3278738 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| BEI53_RS17910 | pyrH | 3278805..3279527 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| BEI53_RS17915 | frr | 3279530..3280087 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| BEI53_RS17920 | uppS | 3280173..3280949 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| BEI53_RS17925 | cdsA | 3280967..3281758 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| BEI53_RS17930 | dxr | 3281782..3282924 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| BEI53_RS17935 | rseP | 3282941..3284197 (+) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| BEI53_RS17940 | - | 3284307..3286007 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| BEI53_RS17950 | - | 3286132..3290433 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| BEI53_RS17955 | rimP | 3290766..3291236 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| BEI53_RS17960 | nusA | 3291254..3292360 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| BEI53_RS17965 | rnpM | 3292372..3292644 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| BEI53_RS17970 | - | 3292645..3292956 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| BEI53_RS17975 | infB | 3292961..3295021 (+) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| BEI53_RS17980 | - | 3295018..3295299 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| BEI53_RS17985 | rbfA | 3295315..3295671 (+) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| BEI53_RS17990 | truB | 3295758..3296681 (+) | 924 | WP_000399337.1 | tRNA pseudouridine(55) synthase TruB | - |
| BEI53_RS17995 | ribF | 3296725..3297696 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| BEI53_RS18000 | rpsO | 3297797..3298066 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| BEI53_RS18005 | pnp | 3298227..3300365 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| BEI53_RS18010 | - | 3300517..3301416 (+) | 900 | WP_000647532.1 | polysaccharide deacetylase family protein | - |
| BEI53_RS18015 | - | 3301503..3302744 (+) | 1242 | WP_000592993.1 | M16 family metallopeptidase | - |
| BEI53_RS18020 | - | 3302871..3303122 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| BEI53_RS18030 | dpaA | 3303397..3304299 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| BEI53_RS18035 | dpaB | 3304296..3304895 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| BEI53_RS18040 | asd | 3305046..3306092 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| BEI53_RS18045 | dapG | 3306116..3307348 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| BEI53_RS18050 | dapA | 3307360..3308238 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BEI53_RS18060 | - | 3309004..3310674 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=212210 BEI53_RS17895 WP_000421288.1 3275915..3276694(+) (codY) [Bacillus cereus strain JEM-2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=212210 BEI53_RS17895 WP_000421288.1 3275915..3276694(+) (codY) [Bacillus cereus strain JEM-2]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAACTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAACTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |