Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BEI49_RS19400 Genome accession   NZ_CP018933
Coordinates   3597084..3597863 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus strain ISSFR-9F     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592084..3602863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI49_RS19375 uppS 3592829..3593605 (-) 777 WP_000971301.1 isoprenyl transferase -
  BEI49_RS19380 frr 3593691..3594248 (-) 558 WP_000531503.1 ribosome recycling factor -
  BEI49_RS19385 pyrH 3594251..3594973 (-) 723 WP_000042663.1 UMP kinase -
  BEI49_RS19390 tsf 3595040..3595927 (-) 888 WP_001018581.1 translation elongation factor Ts -
  BEI49_RS19395 rpsB 3596031..3596732 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  BEI49_RS19400 codY 3597084..3597863 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BEI49_RS19405 hslU 3597941..3599332 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  BEI49_RS19410 hslV 3599355..3599897 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  BEI49_RS19415 xerC 3599940..3600839 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  BEI49_RS19420 trmFO 3600905..3602209 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=212144 BEI49_RS19400 WP_000421288.1 3597084..3597863(-) (codY) [Bacillus cereus strain ISSFR-9F]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=212144 BEI49_RS19400 WP_000421288.1 3597084..3597863(-) (codY) [Bacillus cereus strain ISSFR-9F]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAACTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment