Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BUN12_RS04520 Genome accession   NZ_CP018902
Coordinates   815335..816114 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HK1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 810335..821114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUN12_RS04500 (BUN12_0879) trmFO 811022..812329 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BUN12_RS04505 (BUN12_0880) xerC 812399..813316 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  BUN12_RS04510 (BUN12_0881) hslV 813332..813877 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  BUN12_RS04515 (BUN12_0882) hslU 813894..815297 (+) 1404 WP_013352251.1 HslU--HslV peptidase ATPase subunit -
  BUN12_RS04520 (BUN12_0883) codY 815335..816114 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BUN12_RS04525 (BUN12_0884) flgB 816468..816857 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  BUN12_RS04530 (BUN12_0885) flgC 816857..817309 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  BUN12_RS04535 (BUN12_0886) fliE 817320..817640 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BUN12_RS04540 (BUN12_0887) fliF 817683..819293 (+) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  BUN12_RS04545 (BUN12_0888) fliG 819306..820322 (+) 1017 WP_127721098.1 flagellar motor switch protein FliG -
  BUN12_RS04550 (BUN12_0889) fliH 820315..821070 (+) 756 WP_013352257.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=211517 BUN12_RS04520 WP_013352252.1 815335..816114(+) (codY) [Bacillus amyloliquefaciens strain HK1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=211517 BUN12_RS04520 WP_013352252.1 815335..816114(+) (codY) [Bacillus amyloliquefaciens strain HK1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment