Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | BUM85_RS04840 | Genome accession | NZ_CP018842 |
| Coordinates | 940957..942024 (+) | Length | 355 a.a. |
| NCBI ID | WP_102841601.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain 14.1.R1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 935957..947024
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BUM85_RS04810 (BUM85_04790) | - | 936375..937835 (+) | 1461 | WP_038813170.1 | rhomboid family protein | - |
| BUM85_RS04815 (BUM85_04795) | - | 937819..938019 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| BUM85_RS04820 (BUM85_04800) | - | 938019..939005 (+) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| BUM85_RS04825 (BUM85_04805) | - | 939005..939331 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| BUM85_RS04830 (BUM85_04810) | - | 939331..939954 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| BUM85_RS04835 (BUM85_04815) | comGA | 940011..940985 (+) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BUM85_RS04840 (BUM85_04820) | comGB | 940957..942024 (+) | 1068 | WP_102841601.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| BUM85_RS04845 (BUM85_04825) | comGC | 942042..942359 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BUM85_RS04850 (BUM85_04830) | comGD | 942349..942786 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| BUM85_RS04855 (BUM85_04835) | - | 942773..943066 (+) | 294 | WP_002446530.1 | hypothetical protein | - |
| BUM85_RS04860 (BUM85_04840) | - | 942990..943481 (+) | 492 | WP_002457724.1 | competence type IV pilus minor pilin ComGF | - |
| BUM85_RS04870 (BUM85_04850) | - | 943646..944158 (+) | 513 | WP_002457723.1 | shikimate kinase | - |
| BUM85_RS04875 (BUM85_04855) | gcvT | 944376..945467 (+) | 1092 | WP_002457722.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BUM85_RS04880 (BUM85_04860) | gcvPA | 945487..946833 (+) | 1347 | WP_002446526.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42350.56 Da Isoelectric Point: 10.0598
>NTDB_id=210932 BUM85_RS04840 WP_102841601.1 940957..942024(+) (comGB) [Staphylococcus epidermidis strain 14.1.R1]
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGIPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGIPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=210932 BUM85_RS04840 WP_102841601.1 940957..942024(+) (comGB) [Staphylococcus epidermidis strain 14.1.R1]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGATCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGATCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
48.596 |
100 |
0.487 |
| comGB | Staphylococcus aureus N315 |
48.596 |
100 |
0.487 |