Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BSQ33_RS07510 Genome accession   NZ_CP018835
Coordinates   1662656..1663357 (+) Length   233 a.a.
NCBI ID   WP_088133766.1    Uniprot ID   A0A1Z2SEG2
Organism   Vibrio gazogenes strain ATCC 43942     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1657656..1668357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS07490 (BSQ33_07545) greB 1658229..1658708 (+) 480 WP_021021687.1 transcription elongation factor GreB -
  BSQ33_RS07495 (BSQ33_07550) - 1658733..1661042 (+) 2310 WP_088133765.1 Tex family protein -
  BSQ33_RS07500 (BSQ33_07555) - 1661174..1661650 (-) 477 WP_027694391.1 hypothetical protein -
  BSQ33_RS07505 (BSQ33_07560) bioH 1661801..1662565 (-) 765 WP_198298182.1 pimeloyl-ACP methyl ester esterase BioH -
  BSQ33_RS07510 (BSQ33_07565) comF 1662656..1663357 (+) 702 WP_088133766.1 phosphoribosyltransferase family protein Machinery gene
  BSQ33_RS07515 (BSQ33_07570) nfuA 1663441..1664028 (+) 588 WP_021021692.1 Fe-S biogenesis protein NfuA -
  BSQ33_RS07520 (BSQ33_07575) nudE 1664192..1664770 (+) 579 WP_021021693.1 ADP compounds hydrolase NudE -
  BSQ33_RS07525 (BSQ33_07580) cysQ 1664767..1665588 (+) 822 WP_021021694.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BSQ33_RS07530 (BSQ33_07585) - 1665653..1666408 (-) 756 WP_021021695.1 type II secretion system protein N -
  BSQ33_RS07535 (BSQ33_07590) gspM 1666429..1666920 (-) 492 WP_027694394.1 type II secretion system protein GspM -
  BSQ33_RS07540 (BSQ33_07595) gspL 1666930..1668144 (-) 1215 WP_157721361.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26907.33 Da        Isoelectric Point: 8.5451

>NTDB_id=210776 BSQ33_RS07510 WP_088133766.1 1662656..1663357(+) (comF) [Vibrio gazogenes strain ATCC 43942]
MLLQRIQHSFRQCIPRLCALCELPLANQEYHWCTSCLTYFQSTPRCTRCGLSMPFPTGRCGTCLQSPPLWNALYCLGDYA
YPLAPMIHQIKYGRQFWHIPPLAALLAQHIPSPAPLLLPVPLHWRRYLYRGFNQSDLLAHHLSQALAVSYQTRLLQRIRS
TPPQEGLHKNEREQNLRKAFMLRSRPPTNHVAIVDDVVTTGSTINQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=210776 BSQ33_RS07510 WP_088133766.1 1662656..1663357(+) (comF) [Vibrio gazogenes strain ATCC 43942]
ATGTTATTGCAACGCATCCAACACTCTTTCCGTCAGTGTATCCCCCGATTATGTGCACTCTGTGAGCTGCCGTTAGCTAA
TCAGGAATACCACTGGTGTACCAGTTGCCTGACCTATTTTCAATCAACACCCCGTTGTACACGATGTGGCTTATCGATGC
CATTCCCAACCGGCCGATGCGGAACTTGCCTTCAGTCACCGCCATTGTGGAACGCCCTCTATTGCCTTGGTGATTATGCC
TATCCGCTGGCACCCATGATTCACCAAATCAAATACGGACGTCAGTTCTGGCACATACCGCCTCTTGCCGCACTTTTGGC
GCAGCACATCCCTTCCCCTGCACCACTGTTACTTCCGGTTCCCCTACACTGGCGACGTTATCTTTACCGCGGGTTCAATC
AGAGTGATTTACTGGCACACCATCTCAGTCAGGCGCTGGCAGTCTCCTATCAAACCAGACTGCTGCAACGGATCCGTTCA
ACACCACCACAAGAAGGTCTGCATAAAAATGAAAGGGAACAAAATCTGAGAAAAGCGTTTATGTTACGCAGCCGCCCCCC
GACCAATCATGTTGCGATCGTTGATGATGTCGTAACAACAGGCAGTACCATCAATCAATTATGCCAATTATTGCTTGAAG
TTGGCGTCGAATACATTGATATTTATTGCTTATGCAGAACTCCTGAATATCACAACCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z2SEG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.338

91.416

0.515
  comF Vibrio campbellii strain DS40M4

46.186

100

0.468

Multiple sequence alignment