Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | BXP07_RS02340 | Genome accession | NZ_CP024079 |
| Coordinates | 455236..455502 (+) | Length | 88 a.a. |
| NCBI ID | WP_001173705.1 | Uniprot ID | A0A8J3FT93 |
| Organism | Helicobacter pylori strain 7.13_R3c | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 450236..460502
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP07_RS02320 (BXP07_02310) | - | 452311..453091 (+) | 781 | Protein_433 | hypothetical protein | - |
| BXP07_RS02325 (BXP07_02315) | - | 453110..453403 (+) | 294 | WP_001160321.1 | hypothetical protein | - |
| BXP07_RS02330 (BXP07_02320) | - | 453410..454936 (+) | 1527 | WP_000323325.1 | hypothetical protein | - |
| BXP07_RS02335 (BXP07_02325) | - | 454933..455235 (+) | 303 | WP_000850076.1 | hypothetical protein | - |
| BXP07_RS02340 (BXP07_02330) | comB3 | 455236..455502 (+) | 267 | WP_001173705.1 | hypothetical protein | Machinery gene |
| BXP07_RS02345 (BXP07_02335) | - | 455549..457917 (+) | 2369 | Protein_438 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| BXP07_RS02350 (BXP07_02340) | - | 457920..459953 (+) | 2034 | WP_000655395.1 | type IA DNA topoisomerase | - |
| BXP07_RS08680 (BXP07_02345) | - | 460145..460444 (+) | 300 | WP_000366737.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10162.98 Da Isoelectric Point: 4.8782
>NTDB_id=210327 BXP07_RS02340 WP_001173705.1 455236..455502(+) (comB3) [Helicobacter pylori strain 7.13_R3c]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
Nucleotide
Download Length: 267 bp
>NTDB_id=210327 BXP07_RS02340 WP_001173705.1 455236..455502(+) (comB3) [Helicobacter pylori strain 7.13_R3c]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
42.169 |
94.318 |
0.398 |