Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | BXP05_RS02650 | Genome accession | NZ_CP024077 |
| Coordinates | 524871..525134 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | O25204 |
| Organism | Helicobacter pylori strain 7.13_R3a | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 519871..530134
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP05_RS02630 (BXP05_02625) | - | 520781..521917 (-) | 1137 | WP_000067692.1 | VirB8/TrbF family protein | - |
| BXP05_RS08415 (BXP05_02630) | - | 521910..522050 (-) | 141 | WP_000789929.1 | hypothetical protein | - |
| BXP05_RS02640 (BXP05_02635) | comB4 | 522047..524623 (-) | 2577 | WP_000893946.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| BXP05_RS02645 (BXP05_02640) | - | 524623..524859 (-) | 237 | WP_001168532.1 | hypothetical protein | - |
| BXP05_RS02650 (BXP05_02645) | comB3 | 524871..525134 (-) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| BXP05_RS02655 (BXP05_02650) | comB2 | 525146..525430 (-) | 285 | WP_000736106.1 | TrbC/VirB2 family protein | Machinery gene |
| BXP05_RS02660 (BXP05_02655) | - | 525408..525785 (-) | 378 | WP_000571141.1 | hypothetical protein | - |
| BXP05_RS02665 (BXP05_02660) | - | 525778..526008 (-) | 231 | WP_000189079.1 | hypothetical protein | - |
| BXP05_RS02670 (BXP05_02665) | - | 526011..526799 (-) | 789 | WP_001140571.1 | hypothetical protein | - |
| BXP05_RS02675 (BXP05_02670) | - | 526849..527514 (+) | 666 | WP_041201762.1 | hypothetical protein | - |
| BXP05_RS02680 (BXP05_02675) | - | 527594..528667 (-) | 1074 | WP_001278345.1 | tyrosine-type recombinase/integrase | - |
| BXP05_RS02685 (BXP05_02680) | - | 529372..529929 (+) | 558 | WP_001101625.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=210240 BXP05_RS02650 WP_001177716.1 524871..525134(-) (comB3) [Helicobacter pylori strain 7.13_R3a]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=210240 BXP05_RS02650 WP_001177716.1 524871..525134(-) (comB3) [Helicobacter pylori strain 7.13_R3a]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTATGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTATGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |