Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DR_RS01870 Genome accession   NC_001263
Coordinates   360676..361422 (+) Length   248 a.a.
NCBI ID   WP_234944664.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355676..366422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR_RS01835 (DR_0354) - 355939..356724 (-) 786 WP_034349517.1 exodeoxyribonuclease III -
  DR_RS01840 (DR_0355) - 356849..357157 (+) 309 WP_010887000.1 hypothetical protein -
  DR_RS01845 (DR_0356) - 357189..357911 (-) 723 WP_227085982.1 methyltransferase domain-containing protein -
  DR_RS01850 (DR_0357) - 357818..358345 (-) 528 WP_027479588.1 YqgE/AlgH family protein -
  DR_RS01855 (DR_0358) - 358428..359294 (+) 867 WP_027479587.1 YgfZ/GcvT domain-containing protein -
  DR_RS01860 (DR_0359) - 359287..359766 (+) 480 WP_010887004.1 hypothetical protein -
  DR_RS01865 (DR_0360) - 359866..360297 (+) 432 WP_010887005.1 DUF3006 domain-containing protein -
  DR_RS01870 (DR_0361) comEC 360676..361422 (+) 747 WP_234944664.1 ComEC/Rec2 family competence protein Machinery gene
  DR_RS01875 (DR_0362) - 361570..362589 (-) 1020 WP_010887007.1 D-alanine--D-alanine ligase family protein -
  DR_RS01880 (DR_0363) - 362823..364541 (+) 1719 WP_027479585.1 ABC transporter substrate-binding protein -
  DR_RS01885 (DR_0364) - 364757..365779 (+) 1023 WP_010887009.1 ABC transporter permease -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26814.21 Da        Isoelectric Point: 7.6073

>NTDB_id=21022 DR_RS01870 WP_234944664.1 360676..361422(+) (comEC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539]
MQFLDVGQGDAVLVRSPEGKTMLVDGGRSTERMREHLKALGVNKIDLMVASHADADHIAGLVEAAKTGHPTLFINNGLGG
TTQTWNKLVAALQDAGTTFQKANNQVINLGSVKVRVIAPPAGMGDDQNDNSVGIRVEFGQFAALMTGDSETKETLAWVAE
RRPEIRGPVQVYKSIHHGAANGDHQAWFNVVKPENVVISVGENNYGHPTQAALDLYQKNNLRVYRTDRQGTITFKGKADG
SYVVATVR

Nucleotide


Download         Length: 747 bp        

>NTDB_id=21022 DR_RS01870 WP_234944664.1 360676..361422(+) (comEC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539]
GTGCAGTTTCTGGACGTGGGCCAGGGCGACGCCGTGCTGGTCCGCAGTCCCGAAGGCAAAACCATGCTGGTGGACGGCGG
GCGCAGCACCGAGCGGATGCGCGAGCATCTCAAGGCGCTGGGCGTGAATAAAATCGACCTGATGGTCGCCTCGCACGCCG
ACGCCGACCACATCGCGGGGCTGGTGGAAGCGGCGAAGACGGGCCACCCCACCCTCTTCATCAACAACGGGCTCGGCGGC
ACCACCCAGACCTGGAACAAGCTGGTTGCGGCCTTGCAAGACGCCGGCACCACCTTCCAAAAGGCGAACAATCAGGTCAT
CAACCTGGGGAGCGTGAAGGTCCGGGTCATCGCTCCCCCCGCCGGCATGGGCGACGACCAGAACGACAACTCGGTGGGCA
TCCGAGTAGAGTTCGGGCAGTTTGCGGCCCTGATGACCGGCGACTCCGAGACGAAAGAAACCCTCGCCTGGGTGGCCGAG
CGCCGCCCCGAGATTCGTGGCCCGGTGCAGGTCTACAAGAGCATCCACCACGGCGCGGCCAACGGCGACCACCAGGCGTG
GTTCAACGTGGTGAAGCCCGAAAACGTCGTCATCAGCGTGGGTGAAAACAACTACGGCCACCCGACCCAGGCCGCGCTCG
ACCTCTACCAGAAGAACAACCTGCGCGTCTACCGCACCGACCGCCAGGGCACCATCACCTTCAAGGGCAAGGCGGACGGT
TCCTACGTGGTCGCCACCGTGCGCTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(5-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.052

100

0.375

Multiple sequence alignment