Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BUE84_RS18870 Genome accession   NZ_CP018786
Coordinates   4169150..4169803 (+) Length   217 a.a.
NCBI ID   WP_079243028.1    Uniprot ID   -
Organism   Chryseobacterium indologenes strain AA5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4164150..4174803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUE84_RS18855 aceA 4164273..4165553 (-) 1281 WP_079243025.1 isocitrate lyase -
  BUE84_RS18860 aceB 4165658..4167232 (-) 1575 WP_079243026.1 malate synthase A -
  BUE84_RS18865 - 4167359..4168840 (+) 1482 WP_079243027.1 helix-turn-helix domain-containing protein -
  BUE84_RS18870 comF 4169150..4169803 (+) 654 WP_079243028.1 ComF family protein Machinery gene
  BUE84_RS18875 - 4170000..4170686 (+) 687 WP_079243029.1 alpha/beta fold hydrolase -
  BUE84_RS18880 upp 4170688..4171338 (-) 651 WP_062676151.1 uracil phosphoribosyltransferase -
  BUE84_RS18885 der 4171500..4172810 (-) 1311 WP_034696809.1 ribosome biogenesis GTPase Der -
  BUE84_RS18895 - 4173393..4173923 (-) 531 WP_079243030.1 antirestriction protein ArdA -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25428.25 Da        Isoelectric Point: 7.7780

>NTDB_id=210190 BUE84_RS18870 WP_079243028.1 4169150..4169803(+) (comF) [Chryseobacterium indologenes strain AA5]
MILDLLFPNRCIHCNRIIDSELLVCDLCFHQIHFTHYDYFENNPVKEKCSLFFPVENAYSLIQFEEESLSRQIIHELKYR
SREKTGKILADWTTERLNFNNKKPDLLINVPLHPRKLKERGYNQLHLFTETLSSFYNIPFNHQLIKRNYYSKAQALKDKK
HRLETINTFSVTQPVSGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVMAVDI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=210190 BUE84_RS18870 WP_079243028.1 4169150..4169803(+) (comF) [Chryseobacterium indologenes strain AA5]
ATGATATTAGACTTATTGTTTCCAAACCGTTGCATTCATTGTAACAGAATCATTGATTCTGAACTTTTGGTTTGTGACCT
TTGTTTTCATCAGATTCATTTTACACACTATGATTATTTTGAAAATAATCCGGTCAAGGAAAAATGCAGTTTATTTTTTC
CGGTTGAAAACGCTTATTCTTTAATACAATTTGAAGAGGAAAGTTTAAGCCGGCAGATTATCCACGAACTGAAATACAGA
AGCAGGGAAAAAACAGGAAAGATTCTGGCAGACTGGACTACAGAACGTCTTAATTTCAATAATAAAAAACCTGATTTACT
AATAAATGTTCCTCTTCATCCAAGGAAACTCAAAGAGCGCGGATATAATCAACTTCATTTATTCACAGAAACTTTGTCTT
CATTTTATAACATTCCTTTCAATCATCAATTAATTAAACGAAATTACTATTCAAAAGCTCAGGCTTTAAAAGACAAAAAA
CATAGGCTGGAAACCATTAATACATTTTCAGTCACCCAACCTGTTTCCGGAAAGCATATCCTCCTGATCGATGATGTTTT
TACTACAGGAAATACTGTGTCATCGGTTGCATGGGAGATTTTGAACGCCGGAGACAATAAAGTAAGTGTATTGGTGATGG
CTGTGGATATTTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.315

99.539

0.521

Multiple sequence alignment