Detailed information NTG0210135

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BTZ13_RS06560
• Genome accession: NZ_CP018776
• Coordinates: 1404254..1406674 (+)
• Length: 806 a.a.
• NCBI ID: WP_075140940.1
• Uniprot ID: -
• Organism: Staphylococcus condimenti strain StO 2014-01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1399254..1411674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTZ13_RS13090	-	1399560..1399724 (+)	165	WP_156483151.1	hypothetical protein	-
BTZ13_RS06535 (BTZ13_06535)	-	1399798..1400004 (+)	207	WP_047131827.1	CsbD family protein	-
BTZ13_RS06540 (BTZ13_06540)	-	1400040..1401038 (-)	999	WP_047131826.1	LLM class flavin-dependent oxidoreductase	-
BTZ13_RS06545 (BTZ13_06545)	-	1401220..1402359 (+)	1140	WP_070704024.1	cysteine desulfurase family protein	-
BTZ13_RS06550 (BTZ13_06550)	mnmA	1402362..1403474 (+)	1113	WP_047131824.1	tRNA 2-thiouridine(34) synthase MnmA	-
BTZ13_RS06555 (BTZ13_06555)	-	1403582..1404250 (+)	669	WP_047131823.1	tetratricopeptide repeat protein	-
BTZ13_RS06560 (BTZ13_06560)	recD2	1404254..1406674 (+)	2421	WP_075140940.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BTZ13_RS06565 (BTZ13_06565)	alaS	1406982..1409612 (+)	2631	WP_047131821.1	alanine--tRNA ligase	-
BTZ13_RS06570 (BTZ13_06570)	-	1409681..1409944 (+)	264	WP_047131820.1	IreB family regulatory phosphoprotein	-
BTZ13_RS06575 (BTZ13_06575)	ruvX	1409947..1410375 (+)	429	WP_047131819.1	Holliday junction resolvase RuvX	-
BTZ13_RS06580 (BTZ13_06580)	-	1410398..1410709 (+)	312	WP_070704030.1	DUF1292 domain-containing protein	-
BTZ13_RS06585 (BTZ13_06585)	-	1410997..1411638 (+)	642	WP_047131817.1	O-methyltransferase	-

Sequence

Protein

• Length: 806 a.a.
• Molecular weight: 90931.21 Da
• Isoelectric Point: 4.4085

>NTDB_id=210135 BTZ13_RS06560 WP_075140940.1 1404254..1406674(+) (recD2) [Staphylococcus condimenti strain StO 2014-01]
MSNPTLFDYSMVKGTVEAILFQNKENFYTVLKVDPIETNEEFDSMPTVVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAENIVDTLGENAINKILDDEQVLAEVPHLSKKKQKQIAEQIYSNQEVEKIM
IRLHDLGFGPKLSMNIYQVYQVETLTEIEKNPYQLVYDVKGVGFNKADTLAKNLGIEYNDPERLKAGLLYTIEEECIKQG
HTYLPKDYVIEASQDTLSQVHSESIDAQLLEEMIVQLTEEEKLVEADETLSVPSLYYSEVKSVQNLYRIEAHQTKLETIE
QSDLQIHIGEIEDVNNVNYAASQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQETKPEDVLENEINAKLIIIDEMSMVDTWLFHQFLNAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVVPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITQRFHDRSFIPCSADQIPDVVNKVVTSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKQEDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIQGIFW
AKENELNKDVLVVDFDGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPVVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMQTYGQVRMTRMAQLLRDYFGTEMSETINETENDIDTNEIIAEQNSKVIALSEETIFEIDPMIGMGNVTPY
SFANDK

Nucleotide

• Length: 2421 bp

>NTDB_id=210135 BTZ13_RS06560 WP_075140940.1 1404254..1406674(+) (recD2) [Staphylococcus condimenti strain StO 2014-01]
TTGAGCAACCCTACATTATTTGATTATTCAATGGTCAAAGGTACAGTTGAAGCTATTCTTTTTCAAAATAAAGAAAACTT
TTACACTGTATTAAAAGTAGATCCAATCGAGACAAATGAAGAATTTGATAGTATGCCGACCGTTGTAGGGTTCTTTCCTG
AAATTGCGGAAGGAGATGTTTATACTTTTAAAGGTCAAGCTGTCACTCACCCTCGATATGGCAAGCAATTAAAAGCTGAG
ACCTTTGAAAAAGAACTGCCGCAAACTAAAGATGCGATTGTAAGTTATCTCTCAAGTGATTTATTTAAAGGCATCGGGAA
AAAAACAGCAGAAAATATCGTCGACACACTTGGTGAAAATGCGATTAATAAAATTCTTGATGATGAACAAGTATTGGCAG
AAGTACCGCATCTGTCTAAGAAAAAGCAAAAACAAATTGCAGAACAAATTTACAGTAATCAAGAAGTTGAAAAAATCATG
ATTCGTCTGCATGATTTAGGTTTCGGTCCTAAATTATCGATGAATATTTACCAAGTTTACCAAGTTGAAACACTCACTGA
AATTGAGAAGAATCCGTATCAGCTTGTCTATGATGTTAAAGGGGTCGGTTTTAATAAAGCTGATACTTTAGCTAAGAATC
TTGGTATTGAATACAATGATCCTGAACGATTAAAAGCAGGATTATTATATACAATTGAGGAAGAATGTATTAAACAAGGA
CATACGTATTTGCCGAAAGATTATGTGATTGAAGCTTCACAAGATACTTTATCTCAAGTGCATAGCGAATCCATTGATGC
CCAATTGTTGGAAGAGATGATTGTACAGCTGACTGAAGAAGAAAAGTTGGTAGAAGCAGATGAAACACTTTCTGTACCAA
GTTTATATTATTCAGAAGTTAAAAGTGTACAAAATTTATATCGCATTGAAGCACATCAAACAAAACTAGAGACAATTGAA
CAATCAGACCTGCAGATACACATTGGAGAAATTGAAGATGTCAATAATGTAAATTATGCTGCATCTCAAAAAGAAGCACT
TGAAACTGCTATAAATTCTAAAGTCATGCTGTTAACAGGCGGGCCTGGTACAGGTAAAACAACTGTGATTAAAGGTATTG
TAGAATTATATGCTGAAATCCATGGTCTGTCTCTTGATTATGATGATTATAACGAAGATGATTATCCTGTCGCTTTAGCA
GCACCAACAGGCCGAGCTGCTAAAAGATTGCAAGAATCTACGGGATTAGAAGCTATGACGATACATCGATTAATCGGTTG
GAGCCAAGAAACAAAACCAGAAGACGTTCTTGAAAATGAAATCAACGCTAAGCTGATTATTATCGACGAAATGTCTATGG
TCGACACATGGCTGTTCCACCAATTTTTAAATGCCGTTCCAATTGATGCGCAAGTCATCTTAGTAGGAGATGAAGATCAA
TTACCTTCAGTAGGTCCAGGGCAAGTATTTAAAGATTTAATTGATTCTAAAGTAGTGCCGCGTGTGAATCTAACTGAAGT
TTATCGCCAACAAGACGGTTCTAGTATTATTGAATTAGCACATAAAATGAAACTGGGACAGCCAATTGATATTACACAAC
GATTTCATGATCGCAGTTTTATACCATGCAGTGCCGATCAAATACCGGATGTAGTTAATAAAGTGGTAACCTCAGCTGTG
AAAAAAGGTTATGATATGAGTGATATTCAAGTACTTGCACCGATGTACAGAGGCAGTGCTGGTATTAAGCGTCTGAATAA
AGTACTTCAAGACATTTTAAATCCTAAACAAGAAGATACACGTGAAATCGAATTCGGAGATGTTGTTTTTCGAAAAGGCG
ATAAAGTACTGCAATTAGTTAATCGACCAAGCGATAATATTTTTAACGGAGATATTGGCGTCATTCAAGGTATCTTTTGG
GCAAAAGAAAATGAATTGAATAAAGATGTGTTAGTCGTTGATTTTGATGGAAATGAAATTACATTTACCAAACAAGATAT
GATGGAACTTACGCATGCTTATTGTACTTCCATTCATAAAGCGCAAGGTTCAGAGTTTCCAATTGTGATAATGCCGGTAG
TCAAACAATATTACCGCATGCTGCAAAGACCGATTATTTATACAGGATTAACGCGAGCTAAACAATCTTTAGTTTTTCTA
GGCGACAGTCAAGCCTTTGATATTGGTATGCAAACCTATGGTCAAGTGCGGATGACACGTATGGCACAGCTATTGCGCGA
TTATTTCGGTACAGAAATGAGCGAAACAATAAATGAAACAGAAAATGATATAGATACAAACGAGATAATTGCAGAACAAA
ATTCAAAAGTCATTGCGTTATCAGAAGAAACAATATTTGAAATTGACCCGATGATTGGAATGGGTAATGTCACACCTTAT
AGTTTCGCGAATGATAAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• AAA domain (AAA_30) (339-544)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	51.365	100	0.514