Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGE   Type   Machinery gene
Locus tag   BSG37_RS08170 Genome accession   NZ_CP018768
Coordinates   1632136..1632435 (-) Length   99 a.a.
NCBI ID   WP_000844410.1    Uniprot ID   A0A7R6NZL1
Organism   Staphylococcus aureus strain UCI 28 isolate ST5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1627136..1637435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG37_RS08145 (BSG37_08145) gcvPA 1628348..1629694 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  BSG37_RS08150 (BSG37_08150) gcvT 1629714..1630805 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  BSG37_RS08155 (BSG37_08155) - 1630964..1631488 (-) 525 WP_031784745.1 shikimate kinase -
  BSG37_RS08160 (BSG37_08160) - 1631478..1631624 (-) 147 WP_001792109.1 hypothetical protein -
  BSG37_RS08165 (BSG37_08165) comGF 1631721..1632218 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSG37_RS08170 (BSG37_08170) comGE 1632136..1632435 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  BSG37_RS08175 (BSG37_08175) comGD 1632422..1632868 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSG37_RS08180 (BSG37_08180) comGC 1632846..1633157 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  BSG37_RS08185 (BSG37_08185) comGB 1633171..1634241 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  BSG37_RS08190 (BSG37_08190) comGA 1634213..1635187 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  BSG37_RS08195 (BSG37_08195) - 1635239..1635862 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  BSG37_RS08200 (BSG37_08200) - 1635859..1636188 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  BSG37_RS08205 (BSG37_08205) - 1636188..1637174 (-) 987 WP_000161311.1 ROK family glucokinase -
  BSG37_RS08210 (BSG37_08210) - 1637171..1637374 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence


Protein


Download         Length: 99 a.a.        Molecular weight: 11079.18 Da        Isoelectric Point: 9.9215

>NTDB_id=210094 BSG37_RS08170 WP_000844410.1 1632136..1632435(-) (comGE) [Staphylococcus aureus strain UCI 28 isolate ST5]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQSIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=210094 BSG37_RS08170 WP_000844410.1 1632136..1632435(-) (comGE) [Staphylococcus aureus strain UCI 28 isolate ST5]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAATCAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAATATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7R6NZL1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus N315

100

100

1

  comGE Staphylococcus aureus MW2

85.965

100

0.99


Multiple sequence alignment