Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   CR541_RS01220 Genome accession   NZ_CP024050
Coordinates   210844..213333 (-) Length   829 a.a.
NCBI ID   WP_012774926.1    Uniprot ID   A0A0H3MT04
Organism   Streptococcus suis strain CS100322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 205844..218333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR541_RS01195 (CR541_01190) - 206619..207650 (+) 1032 WP_011921803.1 ABC transporter substrate-binding protein -
  CR541_RS01200 (CR541_01195) - 207744..208553 (+) 810 WP_011921804.1 glucosamine-6-phosphate isomerase -
  CR541_RS11105 - 208736..210805 (+) 2070 Protein_194 heavy metal translocating P-type ATPase -
  CR541_RS01220 (CR541_01215) recD/recD2/recDB 210844..213333 (-) 2490 WP_012774926.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CR541_RS01225 (CR541_01220) lepB 213574..214203 (-) 630 WP_011921809.1 signal peptidase I -
  CR541_RS01230 (CR541_01225) rnhC 214213..215103 (-) 891 WP_012774927.1 ribonuclease HIII -
  CR541_RS01235 (CR541_01230) - 215188..216171 (+) 984 WP_012774928.1 Gfo/Idh/MocA family protein -
  CR541_RS01245 (CR541_01235) - 216520..217551 (+) 1032 WP_011922597.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93153.44 Da        Isoelectric Point: 4.5782

>NTDB_id=209809 CR541_RS01220 WP_012774926.1 210844..213333(-) (recD/recD2/recDB) [Streptococcus suis strain CS100322]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHTNLTRLMGKNGFKPFPRADVEAA
IAELESISSLTYDNIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRATRRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=209809 CR541_RS01220 WP_012774926.1 210844..213333(-) (recD/recD2/recDB) [Streptococcus suis strain CS100322]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATACAAACCTAACTCGCCTGATGGGAAAAAACGGCTTCAAGCCCTTCCCACGCGCAGACGTCGAGGCTGCC
ATAGCAGAGCTGGAAAGCATATCTTCTCTCACCTACGATAACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGGCCAGGGACTGGAAAAACAACGGTTATCAACGGCATTATCGCAGTCTATGCTATCTTGC
ATAAGATTGACCTGACGCGAAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAACCAGACGGATG
AATGAATTGACAGGGCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAGGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ATATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCCGAGCAATTGCCTTCTGTCAGCCCCGGTCAAGTACTTGCT
GACCTCTTGAAAATTGACAAGCTGCCCAGCATTACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGACAGGGTGCTCTGCCTAGCGATTTTCGTGAGAAAAAGGCTGACCGTTCCTATTTTGAAGCCC
AGAATGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCAGGTATTCCTGCAAACGAGGTACAG
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATCGACCAACTCAACACTATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTGCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATTTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTAGGCTACATCACCGACCTCCTTCCTGCCAAGTACACCGACTCCAAGCAGGACGAA
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGAAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTCCCCATCACCCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGAAAGCAAGGAAAG
CCTGATTAAAAAAGACGAAAGCAAAACAGCTACAACCACGCAAACCCAGCCCCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.891

92.039

0.376

Multiple sequence alignment