Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BBX44_RS17725 Genome accession   NZ_CP024024
Coordinates   3733386..3733811 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PARM801     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3728386..3738811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS17710 pilX 3728950..3729537 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  BBX44_RS17715 pilY1 3729549..3733040 (+) 3492 WP_003145982.1 type 4a pilus biogenesis protein PilY1 -
  BBX44_RS17720 pilY2 3733042..3733389 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  BBX44_RS17725 comF 3733386..3733811 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  BBX44_RS17730 ispH 3733858..3734802 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BBX44_RS17735 fkpB 3734888..3735328 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  BBX44_RS17740 lspA 3735321..3735830 (-) 510 WP_003110420.1 signal peptidase II -
  BBX44_RS17745 ileS 3735823..3738654 (-) 2832 WP_049270871.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=209728 BBX44_RS17725 WP_003094721.1 3733386..3733811(+) (comF) [Pseudomonas aeruginosa strain PARM801]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=209728 BBX44_RS17725 WP_003094721.1 3733386..3733811(+) (comF) [Pseudomonas aeruginosa strain PARM801]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGTACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment