Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BSU_11450 Genome accession   NC_000964
Coordinates   1222533..1223450 (+) Length   305 a.a.
NCBI ID   NP_389027.1    Uniprot ID   P24139
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217533..1228450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_11420 (BSU11420) trpS 1218113..1219105 (-) 993 NP_389024.1 tryptophanyl-tRNA synthetase -
  BSU_11430 (BSU11430) oppA 1219849..1221486 (+) 1638 NP_389025.1 oligopeptide ABC transporter (binding lipoprotein) -
  BSU_11440 (BSU11440) oppB 1221594..1222529 (+) 936 NP_389026.1 oligopeptide ABC transporter (permease) -
  BSU_11450 (BSU11450) amiD 1222533..1223450 (+) 918 NP_389027.1 oligopeptide ABC transporter (permease) Regulator
  BSU_11460 (BSU11460) oppD 1223455..1224531 (+) 1077 NP_389028.1 oligopeptide ABC transporter (ATP-binding protein) -
  BSU_11470 (BSU11470) oppF 1224533..1225450 (+) 918 NP_389029.1 oligopeptide ABC transporter (ATP-binding protein) -
  BSU_11480 (BSU11480) yjbB 1225557..1226774 (+) 1218 NP_389030.2 putative exporter -
  BSU_11490 (BSU11490) yjbC 1226938..1227516 (+) 579 NP_389031.2 putative thiol oxidation management factor; putative acetyltransferase -
  BSU_11500 (BSU11500) spxA 1227697..1228092 (+) 396 NP_389032.1 redox-sensitive regulator -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=20970 BSU_11450 NP_389027.1 1222533..1223450(+) (amiD) [Bacillus subtilis subsp. subtilis str. 168]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=20970 BSU_11450 NP_389027.1 1222533..1223450(+) (amiD) [Bacillus subtilis subsp. subtilis str. 168]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P24139

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment