Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BG259_RS13685 Genome accession   NZ_CP018680
Coordinates   2844578..2845303 (-) Length   241 a.a.
NCBI ID   WP_074050994.1    Uniprot ID   -
Organism   Vibrio harveyi strain QT520     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2839578..2850303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG259_RS13660 (BG259_13660) - 2840735..2841226 (+) 492 WP_074050992.1 type II secretion system protein M -
  BG259_RS13665 (BG259_13665) - 2841228..2841989 (+) 762 WP_069686747.1 type II secretion system protein N -
  BG259_RS13670 (BG259_13670) cysQ 2842279..2843106 (-) 828 WP_074050993.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BG259_RS13675 (BG259_13675) nudE 2843154..2843720 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  BG259_RS13680 (BG259_13680) nfuA 2843896..2844480 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  BG259_RS13685 (BG259_13685) comF 2844578..2845303 (-) 726 WP_074050994.1 ComF family protein Machinery gene
  BG259_RS13690 (BG259_13690) bioH 2845388..2846152 (+) 765 WP_074051186.1 pimeloyl-ACP methyl ester esterase BioH -
  BG259_RS13695 (BG259_13695) - 2846289..2846753 (+) 465 WP_009698973.1 hypothetical protein -
  BG259_RS13700 (BG259_13700) - 2846857..2849178 (-) 2322 WP_050904726.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27681.74 Da        Isoelectric Point: 8.4332

>NTDB_id=209654 BG259_RS13685 WP_074050994.1 2844578..2845303(-) (comF) [Vibrio harveyi strain QT520]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPIHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=209654 BG259_RS13685 WP_074050994.1 2844578..2845303(-) (comF) [Vibrio harveyi strain QT520]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCATTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACCACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469

Multiple sequence alignment