Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | BXP16_RS02340 | Genome accession | NZ_CP024022 |
| Coordinates | 455233..455499 (+) | Length | 88 a.a. |
| NCBI ID | WP_001173705.1 | Uniprot ID | A0A8J3FT93 |
| Organism | Helicobacter pylori strain 7.13_D3b | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 450233..460499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP16_RS02320 (BXP16_02310) | - | 452308..453088 (+) | 781 | Protein_432 | hypothetical protein | - |
| BXP16_RS02325 (BXP16_02315) | - | 453107..453400 (+) | 294 | WP_001160321.1 | hypothetical protein | - |
| BXP16_RS02330 (BXP16_02320) | - | 453407..454933 (+) | 1527 | WP_000323325.1 | hypothetical protein | - |
| BXP16_RS02335 (BXP16_02325) | - | 454930..455232 (+) | 303 | WP_000850076.1 | hypothetical protein | - |
| BXP16_RS02340 (BXP16_02330) | comB3 | 455233..455499 (+) | 267 | WP_001173705.1 | hypothetical protein | Machinery gene |
| BXP16_RS02345 (BXP16_02335) | - | 455546..457914 (+) | 2369 | Protein_437 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| BXP16_RS02350 (BXP16_02340) | - | 457917..459950 (+) | 2034 | WP_000655395.1 | type IA DNA topoisomerase | - |
| BXP16_RS08655 (BXP16_02345) | - | 460142..460441 (+) | 300 | WP_000366737.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10162.98 Da Isoelectric Point: 4.8782
>NTDB_id=209598 BXP16_RS02340 WP_001173705.1 455233..455499(+) (comB3) [Helicobacter pylori strain 7.13_D3b]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA
Nucleotide
Download Length: 267 bp
>NTDB_id=209598 BXP16_RS02340 WP_001173705.1 455233..455499(+) (comB3) [Helicobacter pylori strain 7.13_D3b]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTTTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCACTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
42.169 |
94.318 |
0.398 |