Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   JHP_RS05655 Genome accession   NC_000921
Coordinates   1205822..1206595 (+) Length   257 a.a.
NCBI ID   WP_000404501.1    Uniprot ID   Q9ZK56
Organism   Helicobacter pylori J99     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200822..1211595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHP_RS05650 (jhp1084) hopL 1202095..1205808 (+) 3714 WP_000591211.1 Hop family outer membrane protein HopL -
  JHP_RS05655 (jhp1085) proC 1205822..1206595 (+) 774 WP_000404501.1 pyrroline-5-carboxylate reductase Machinery gene
  JHP_RS05660 (jhp1086) - 1206622..1207149 (+) 528 WP_000549873.1 protein adenylyltransferase Fic -
  JHP_RS05665 (jhp1087) ybeY 1207235..1207660 (-) 426 WP_000889536.1 rRNA maturation RNase YbeY -
  JHP_RS05670 (jhp1088) - 1207715..1208209 (-) 495 WP_000516049.1 flavodoxin -
  JHP_RS05675 (jhp1089) - 1208301..1208882 (-) 582 WP_010882608.1 DedA family protein -
  JHP_RS05680 (jhp1090) ccoS 1209007..1209198 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  JHP_RS05685 (jhp1091) - 1209224..1210198 (+) 975 WP_000371804.1 NAD(P)-binding domain-containing protein -
  JHP_RS05690 (jhp1092) - 1210206..1211366 (-) 1161 WP_000944816.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28202.85 Da        Isoelectric Point: 8.6039

>NTDB_id=20941 JHP_RS05655 WP_000404501.1 1205822..1206595(+) (proC) [Helicobacter pylori J99]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALNIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=20941 JHP_RS05655 WP_000404501.1 1205822..1206595(+) (proC) [Helicobacter pylori J99]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGAAGGAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCTTTAGCTGGCGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAATATTGCGAGCAAATTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGCGC
CTTCAATAAGCGAGAAAGCTTTGAATATTATTGAAAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
TCTAGCGTGGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATCTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGTCATGAGAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZK56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment