Detailed information NTG0020929

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JHP_RS02080
• Genome accession: NC_000921
• Coordinates: 424501..425676 (-)
• Length: 391 a.a.
• NCBI ID: WP_000060375.1
• Uniprot ID: -
• Organism: Helicobacter pylori J99
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 419501..430676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHP_RS02045	-	419826..420140 (+)	315	WP_001265942.1	hypothetical protein	-
JHP_RS02050 (jhp0392)	-	420118..420885 (+)	768	WP_000602348.1	RNA polymerase sigma factor FliA	-
JHP_RS02055 (jhp0393)	fliM	420878..421942 (+)	1065	WP_000763588.1	flagellar motor switch protein FliM	-
JHP_RS02060 (jhp0394)	fliY	421946..422803 (+)	858	WP_001150654.1	flagellar motor switch protein FliY	-
JHP_RS02065 (jhp0395)	-	422833..423369 (+)	537	WP_000963980.1	YhcH/YjgK/YiaL family protein	-
JHP_RS02070 (jhp0396)	-	423366..423869 (+)	504	WP_000780230.1	DUF2147 domain-containing protein	-
JHP_RS02075 (jhp0397)	fur	423889..424341 (-)	453	WP_001253271.1	ferric iron uptake transcriptional regulator	-
JHP_RS02080 (jhp0398)	rarA	424501..425676 (-)	1176	WP_000060375.1	replication-associated recombination protein A	Machinery gene
JHP_RS02085 (jhp0399)	-	425673..426044 (-)	372	WP_000272475.1	heat shock protein transcriptional repressor HspR	-
JHP_RS02090 (jhp0400)	-	426054..426920 (-)	867	WP_000045866.1	DnaJ family protein	-
JHP_RS02095 (jhp0401)	-	427088..428338 (+)	1251	WP_001199520.1	hypothetical protein	-
JHP_RS02100 (jhp0402)	-	428582..429448 (-)	867	WP_010882518.1	5'-3' exonuclease	-
JHP_RS02105 (jhp0403)	-	429669..430565 (-)	897	WP_000697594.1	OriC activity response regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 44058.94 Da
• Isoelectric Point: 9.3505

>NTDB_id=20929 JHP_RS02080 WP_000060375.1 424501..425676(-) (rarA) [Helicobacter pylori J99]
MSLTVLLNPKSLEEFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLKRPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNRALILGASTQDPNYSLSHAIRSRSFTFELTPLKKSDLDRLCDK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYNDDTHYNLTSALIKSLRGSD
ENASMYYLTRLVAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLVCSPKFNTAY
KAINQALDCVQKGLFYLIPKHLLPNVKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=20929 JHP_RS02080 WP_000060375.1 424501..425676(-) (rarA) [Helicobacter pylori J99]
ATGAGCCTGACTGTGCTTTTAAACCCAAAAAGCCTAGAAGAATTTTTAGGCCAAGAACATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAAAACGCCCCATTCTTTCATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCTATTATGGAAAAAAATCGCGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCAATCCGCTCAAGAAGTTTTACTTTTGAATTGACCCCCTTAAAAAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTACTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAACGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATGTATTATCTGACGCGCTTGGTTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATTTGGTTTGTTCGCCCAAGTTTAACACGGCTTAT
AAAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTTATTTTACCTTATTCCTAAACACCTGCTGCCTAACGTTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	36.538	100	0.389