Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BTM21_RS03075 Genome accession   NZ_CP018624
Coordinates   676035..677894 (+) Length   619 a.a.
NCBI ID   WP_079481505.1    Uniprot ID   A0A1U6JJ90
Organism   Clostridium chauvoei strain DSM 7528     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 671035..682894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTM21_RS03055 (BTM21_03050) - 671478..672146 (+) 669 WP_079481506.1 transaldolase family protein -
  BTM21_RS03060 (BTM21_03055) - 672251..673036 (+) 786 WP_021876191.1 HAD family hydrolase -
  BTM21_RS03065 (BTM21_03060) - 673125..673568 (-) 444 WP_021876190.1 MarR family transcriptional regulator -
  BTM21_RS03070 (BTM21_03065) - 673787..676042 (+) 2256 WP_021876189.1 ABC transporter ATP-binding protein -
  BTM21_RS03075 (BTM21_03070) rcrQ 676035..677894 (+) 1860 WP_079481505.1 ABC transporter ATP-binding protein Regulator
  BTM21_RS03080 (BTM21_03075) thiD 678176..678976 (+) 801 WP_021876187.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BTM21_RS03085 (BTM21_03080) thiM 679000..679779 (+) 780 WP_021876186.1 hydroxyethylthiazole kinase -
  BTM21_RS03090 (BTM21_03085) tenA 679781..680440 (+) 660 WP_021876185.1 thiaminase II -
  BTM21_RS03095 (BTM21_03090) thiE 680467..681078 (+) 612 WP_021876184.1 thiamine phosphate synthase -
  BTM21_RS03100 (BTM21_03095) - 681193..682194 (+) 1002 WP_242969966.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68746.52 Da        Isoelectric Point: 6.8479

>NTDB_id=209101 BTM21_RS03075 WP_079481505.1 676035..677894(+) (rcrQ) [Clostridium chauvoei strain DSM 7528]
MSKKEVSIKKGFGGGHMGGAMRGGEKAKDFKGTMKNLMKYLNPFKWGMLLVIIFAIGSAAFSIVGPKILGKATNKIFDGL
MAKLTGATGAGIDFTYIGRVLLFLLGLYLLSALFSFIQGFVMSGISQKVSYNLRKEISEKINRMPLKYFDSKTHGEVLSR
VTNDVDSVSQNLNQSMTQVITSITTLIGVLIMMFSISWIMTLAALLILPISMIFISLVVKKSQKYFKSQQEYLGHVNGQV
EEVYGGHNIVKAFNGEEDAIEEFDRINNTLYGSAWKSQFLSGMMMPIMTFIGNLGYVMVSILGGWLAIKKTIGVGDILSF
IQYIRSFTQPIAQTAQVANLLQSTAAAAERVFEFLHEEEEEQFAENPASIENIKGQVTFENVSFGYNKDKTIINNFNANI
KQGQKVAIVGPTGAGKTTMVKLLMRFYDVNSGEILIDGHNIKDFNRDELRNLFGMVLQETWLFNGSIMENIRYGKLESTD
EEVIKAAKAAHVDHFVKTLPDGYNMELNEEASNVSQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQKAMENLM
EGRTSFIIAHRLSTIRDADLILVMKDGDIIEQGNHEELLKANGFYATLYNSQFENSQAS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=209101 BTM21_RS03075 WP_079481505.1 676035..677894(+) (rcrQ) [Clostridium chauvoei strain DSM 7528]
ATGAGTAAAAAAGAAGTTAGTATAAAAAAGGGCTTTGGTGGTGGCCATATGGGTGGTGCTATGAGAGGTGGAGAAAAAGC
TAAAGATTTTAAAGGGACTATGAAAAATCTTATGAAATATTTAAATCCCTTTAAGTGGGGAATGCTTTTAGTTATTATAT
TTGCAATAGGTAGTGCAGCTTTTTCAATTGTTGGTCCTAAAATTTTAGGTAAAGCAACTAATAAGATTTTCGATGGTCTT
ATGGCAAAACTTACAGGAGCCACTGGAGCAGGAATAGATTTTACTTATATAGGTAGAGTGTTATTATTCTTACTTGGATT
ATATTTATTAAGTGCTTTATTCTCATTTATACAAGGATTTGTAATGTCAGGAATTTCTCAAAAGGTATCATATAACTTAA
GAAAAGAAATTTCAGAGAAAATAAATCGTATGCCACTTAAATATTTTGATTCTAAAACTCATGGCGAAGTATTATCTAGG
GTAACAAATGATGTAGATAGCGTAAGTCAAAATTTAAATCAAAGTATGACACAAGTTATTACATCAATAACAACTTTAAT
TGGTGTACTTATAATGATGTTCTCCATTAGTTGGATAATGACATTAGCAGCACTTTTAATACTACCAATATCAATGATTT
TTATATCACTAGTAGTAAAAAAATCACAAAAGTATTTTAAATCACAACAAGAATATCTAGGTCATGTAAATGGTCAAGTA
GAAGAAGTTTATGGTGGTCATAATATAGTAAAAGCATTTAATGGTGAAGAGGATGCAATAGAAGAATTTGATAGAATAAA
TAATACTTTATATGGTTCAGCTTGGAAGTCACAGTTTTTATCAGGTATGATGATGCCTATAATGACATTCATAGGAAACT
TAGGATATGTAATGGTATCTATTCTTGGTGGGTGGCTTGCAATTAAGAAGACAATAGGAGTTGGAGATATTCTTTCATTT
ATTCAATATATAAGAAGCTTTACGCAACCAATAGCTCAAACTGCTCAAGTAGCCAACTTATTACAATCAACAGCAGCAGC
TGCTGAAAGAGTATTTGAATTTTTACACGAAGAGGAAGAAGAACAATTTGCTGAAAATCCAGCAAGTATAGAAAATATTA
AAGGTCAAGTTACCTTTGAAAATGTTAGCTTTGGATATAATAAAGACAAGACAATAATAAATAATTTTAATGCAAATATA
AAACAAGGACAAAAAGTAGCTATAGTAGGTCCAACAGGAGCAGGAAAAACTACAATGGTAAAACTTTTAATGCGTTTTTA
TGATGTAAATAGTGGAGAGATTCTTATAGATGGCCATAATATAAAAGATTTTAATCGTGATGAGTTAAGAAATTTATTTG
GTATGGTTCTTCAAGAAACTTGGTTATTTAATGGTTCAATTATGGAAAATATAAGATATGGAAAATTAGAATCAACAGAT
GAAGAGGTTATAAAAGCTGCAAAGGCTGCTCATGTAGATCATTTTGTAAAAACTCTTCCAGATGGATATAATATGGAATT
AAATGAAGAAGCAAGTAATGTATCACAAGGACAAAAACAATTATTGACAATAGCTCGGGCTATTTTATCAGATCCAAAGA
TATTAATACTTGATGAAGCAACAAGTTCAGTTGATACTCGTACAGAAGTTTTAATTCAAAAGGCAATGGAAAACCTTATG
GAAGGAAGAACAAGTTTTATAATAGCACACAGATTATCAACTATTAGAGATGCAGATTTAATTCTAGTAATGAAAGATGG
AGATATTATAGAGCAAGGAAATCATGAAGAGTTATTAAAAGCAAATGGATTCTATGCAACTCTTTATAATAGTCAATTTG
AAAATTCACAAGCATCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U6JJ90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.316

94.184

0.493

Multiple sequence alignment