Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BS467_RS16010 Genome accession   NZ_CP018574
Coordinates   3065523..3066302 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain GLB197     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3060523..3071302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS15980 (BS467_15985) fliH 3060636..3061400 (-) 765 WP_017359090.1 flagellar assembly protein FliH -
  BS467_RS15985 (BS467_15990) fliG 3061393..3062409 (-) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  BS467_RS15990 (BS467_15995) fliF 3062421..3064013 (-) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  BS467_RS15995 (BS467_16000) fliE 3064064..3064381 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  BS467_RS16000 (BS467_16005) flgC 3064393..3064845 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  BS467_RS16005 (BS467_16010) flgB 3064845..3065234 (-) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  BS467_RS16010 (BS467_16015) codY 3065523..3066302 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BS467_RS16015 (BS467_16020) hslU 3066337..3067737 (-) 1401 WP_017367242.1 HslU--HslV peptidase ATPase subunit -
  BS467_RS16020 (BS467_16025) hslV 3067754..3068299 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  BS467_RS16025 (BS467_16030) xerC 3068314..3069231 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  BS467_RS16030 (BS467_16035) trmFO 3069294..3070598 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=209001 BS467_RS16010 WP_007499612.1 3065523..3066302(-) (codY) [Bacillus altitudinis strain GLB197]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=209001 BS467_RS16010 WP_007499612.1 3065523..3066302(-) (codY) [Bacillus altitudinis strain GLB197]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGTGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment