Detailed information NTG0208115

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: BS103_RS07985
• Genome accession: NZ_CP018332
• Coordinates: 1638903..1639604 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain A1296
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1633903..1644604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BS103_RS07950 (BS103_07915)	kdsB	1634426..1635187 (+)	762	WP_000680704.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
BS103_RS07955 (BS103_07920)	-	1635199..1636179 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
BS103_RS07960 (BS103_07925)	-	1636191..1636532 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
BS103_RS07965 (BS103_07930)	-	1636550..1637323 (+)	774	WP_000497298.1	TatD family hydrolase	-
BS103_RS07970 (BS103_07935)	-	1637361..1637969 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
BS103_RS07975 (BS103_07940)	-	1637979..1638533 (+)	555	WP_004841361.1	type II secretion system protein	-
BS103_RS07980 (BS103_07945)	xcpV	1638523..1638903 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
BS103_RS07985 (BS103_07950)	xcpW	1638903..1639604 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
BS103_RS07990 (BS103_07955)	gspK	1639604..1640563 (+)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
BS103_RS07995 (BS103_07960)	-	1640793..1641389 (+)	597	WP_004841359.1	6-pyruvoyl trahydropterin synthase family protein	-
BS103_RS08000 (BS103_07965)	ung	1641440..1642153 (+)	714	WP_097355294.1	uracil-DNA glycosylase	-
BS103_RS08005 (BS103_07970)	-	1642150..1643274 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
BS103_RS08010 (BS103_07975)	tadA	1643281..1643784 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
BS103_RS08015 (BS103_07980)	-	1643854..1644297 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=208115 BS103_RS07985 WP_000594572.1 1638903..1639604(+) (xcpW) [Acinetobacter baumannii strain A1296]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=208115 BS103_RS07985 WP_000594572.1 1638903..1639604(+) (xcpW) [Acinetobacter baumannii strain A1296]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGCAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991