Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BSZ04_RS22875 Genome accession   NZ_CP018312
Coordinates   2961091..2961813 (+) Length   240 a.a.
NCBI ID   WP_038883398.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2956091..2966813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS22860 (BSZ04_22590) - 2957244..2959562 (+) 2319 WP_088881467.1 Tex family protein -
  BSZ04_RS22865 (BSZ04_22595) - 2959650..2960114 (-) 465 WP_088881468.1 ATP-dependent Lon protease -
  BSZ04_RS22870 (BSZ04_22600) bioH 2960241..2961011 (-) 771 WP_038883400.1 pimeloyl-ACP methyl ester esterase BioH -
  BSZ04_RS22875 (BSZ04_22605) comF 2961091..2961813 (+) 723 WP_038883398.1 amidophosphoribosyltransferase Machinery gene
  BSZ04_RS22880 (BSZ04_22610) nfuA 2961911..2962495 (+) 585 WP_010445007.1 Fe-S biogenesis protein NfuA -
  BSZ04_RS22885 (BSZ04_22615) nudE 2962647..2963216 (+) 570 WP_088881469.1 ADP compounds hydrolase NudE -
  BSZ04_RS22890 (BSZ04_22620) cysQ 2963260..2964087 (+) 828 WP_045386207.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BSZ04_RS22895 (BSZ04_22625) - 2964574..2966772 (+) 2199 WP_231896314.1 DUF7151 family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27651.99 Da        Isoelectric Point: 8.6246

>NTDB_id=208012 BSZ04_RS22875 WP_038883398.1 2961091..2961813(+) (comF) [Vibrio rotiferianus strain B64D1]
MLSHHWQNIMFRLLGSQCALCQFPLESGQPSILRWCSSCTELLQPQPRCLRCGLQLHSTDSEQVLVCGACLADPPPWQKL
YTLGDYSFPLAGEIQRFKDRRELWQVSGLCHQLAEQISDPAPLLTSVPIHWKRYLTRGFNQSAILTRYLAQNLSQAHDTQ
LFSKVRYTRSQRHYRKQLRKENLAHAFKLNRIPEQKHIAIVDDVVTTGSTVRQLCQLLLEVGVERIDIYCICRTPVPNTI

Nucleotide


Download         Length: 723 bp        

>NTDB_id=208012 BSZ04_RS22875 WP_038883398.1 2961091..2961813(+) (comF) [Vibrio rotiferianus strain B64D1]
ATGTTATCTCATCACTGGCAAAACATCATGTTTCGCCTTCTCGGTAGCCAATGTGCACTTTGCCAGTTCCCGCTCGAAAG
TGGGCAACCTTCCATTCTGCGTTGGTGTTCCAGCTGTACTGAACTACTACAACCTCAGCCAAGGTGTTTGCGCTGCGGAC
TCCAACTTCACTCTACAGATTCAGAGCAGGTATTAGTCTGCGGCGCTTGTTTAGCGGATCCACCACCCTGGCAAAAACTC
TACACCTTAGGTGATTACAGCTTCCCACTGGCTGGGGAAATTCAGCGATTTAAAGATCGCCGTGAATTATGGCAAGTGTC
GGGGCTTTGCCATCAACTTGCAGAGCAAATCTCGGACCCTGCCCCACTATTGACAAGCGTCCCCATTCATTGGAAACGCT
ACCTCACCAGGGGCTTCAATCAAAGTGCAATCTTAACGCGCTACCTTGCACAAAACTTATCGCAAGCACACGATACTCAA
CTTTTTAGCAAAGTGCGTTATACCCGCTCGCAACGACACTACCGAAAACAGCTTAGAAAAGAGAATCTCGCTCATGCCTT
TAAGCTAAATCGAATCCCAGAACAAAAACACATCGCCATTGTTGATGATGTGGTTACCACAGGCAGTACGGTCCGACAAT
TATGTCAATTACTACTTGAAGTTGGGGTCGAAAGAATTGATATTTACTGCATCTGCCGAACTCCTGTTCCAAATACGATC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

56.017

100

0.563
  comF Vibrio cholerae strain A1552

49.367

98.75

0.487

Multiple sequence alignment