Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BSR55_RS19360 Genome accession   NZ_CP018259
Coordinates   4095139..4095573 (-) Length   144 a.a.
NCBI ID   WP_042088546.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4090139..4100573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS19340 (BSR55_19340) - 4091542..4092312 (-) 771 WP_009586178.1 pilus assembly PilX family protein -
  BSR55_RS19345 (BSR55_19345) - 4092313..4093284 (-) 972 WP_100886072.1 PilW family protein -
  BSR55_RS19350 (BSR55_19350) pilV 4093284..4093841 (-) 558 WP_042088543.1 type IV pilus modification protein PilV -
  BSR55_RS19355 (BSR55_19355) - 4093838..4094344 (-) 507 WP_042088545.1 pilus assembly FimT family protein -
  BSR55_RS19360 (BSR55_19360) comF 4095139..4095573 (-) 435 WP_042088546.1 type IV pilin protein Machinery gene
  BSR55_RS19365 (BSR55_19365) - 4095567..4096157 (-) 591 WP_042088547.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BSR55_RS19370 (BSR55_19370) - 4096166..4099828 (-) 3663 WP_100886073.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16258.51 Da        Isoelectric Point: 8.9174

>NTDB_id=207800 BSR55_RS19360 WP_042088546.1 4095139..4095573(-) (comF) [Acinetobacter bereziniae strain XH901]
MVKNISKNRGFTLMELMIVVAIIAILAAIAYPSYSNYKIRTNRVDTQSEMMQISQRLQSYYAIHHNYTNAKLDTNTMTKD
YPAFAELYTIRLTTSDQTWTLTAEPKSNSVQSSDGNLVLNSQGQKCWMKGATCIPSATTNWEGQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=207800 BSR55_RS19360 WP_042088546.1 4095139..4095573(-) (comF) [Acinetobacter bereziniae strain XH901]
ATGGTGAAAAATATCAGTAAAAATAGGGGTTTTACTTTGATGGAGTTGATGATTGTTGTTGCAATCATCGCCATTCTTGC
GGCAATTGCTTATCCGTCATACTCGAATTATAAAATTCGTACAAATCGAGTGGATACACAAAGTGAAATGATGCAAATTT
CTCAGCGTTTACAAAGTTATTATGCCATTCATCATAATTATACCAATGCAAAGCTGGATACCAATACCATGACTAAAGAT
TATCCCGCCTTTGCTGAGCTTTATACAATTAGATTAACAACCAGTGATCAAACATGGACATTGACAGCAGAACCAAAATC
AAATTCTGTTCAGTCATCAGACGGGAATCTTGTACTAAATAGCCAGGGTCAAAAATGTTGGATGAAAGGCGCTACATGTA
TTCCTTCCGCTACCACAAACTGGGAAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-112)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

50.714

97.222

0.493
  pilE Acinetobacter baumannii D1279779

50

94.444

0.472

Multiple sequence alignment