Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | NCTC11637_01367 | Genome accession | LS483488 |
| Coordinates | 1385010..1386185 (+) | Length | 391 a.a. |
| NCBI ID | SQJ09783.1 | Uniprot ID | - |
| Organism | Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1380010..1391185
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCTC11637_01362 | - | 1380266..1381162 (+) | 897 | SQJ09761.1 | two component response regulator | - |
| NCTC11637_01363 | - | 1381418..1382254 (+) | 837 | SQJ09766.1 | DNA-polymerase I-like 5'-3' exonuclease | - |
| NCTC11637_01364 | - | 1382348..1383598 (-) | 1251 | SQJ09770.1 | Uncharacterised protein | - |
| NCTC11637_01365 | dnaJ1 | 1383766..1384632 (+) | 867 | SQJ09775.1 | putative co-chaperone with dnaK | - |
| NCTC11637_01366 | hspR | 1384642..1385013 (+) | 372 | SQJ09779.1 | heat shock transcriptional regulator | - |
| NCTC11637_01367 | rarA | 1385010..1386185 (+) | 1176 | SQJ09783.1 | recombination factor protein RarA | Machinery gene |
| NCTC11637_01368 | fur | 1386345..1386797 (+) | 453 | SQJ09793.1 | ferric uptake regulation protein | - |
| NCTC11637_01369 | - | 1386818..1387315 (-) | 498 | SQJ09797.1 | Uncharacterized protein conserved in bacteria | - |
| NCTC11637_01370 | - | 1387312..1387848 (-) | 537 | SQJ09800.1 | flagellar motor-switch protein | - |
| NCTC11637_01371 | fliN_2 | 1387877..1388740 (-) | 864 | SQJ09805.1 | flagellar motor switch protein FliY | - |
| NCTC11637_01372 | fliM | 1388744..1389808 (-) | 1065 | SQJ09822.1 | flagellar motor switch protein FliM | - |
| NCTC11637_01373 | fliA | 1389801..1390544 (-) | 744 | SQJ09826.1 | flagellar biosynthesis sigma factor | - |
| NCTC11637_01374 | - | 1390546..1390860 (-) | 315 | SQJ09830.1 | Motility integral membrane protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43878.65 Da Isoelectric Point: 8.2164
>NTDB_id=20776 NCTC11637_01367 SQJ09783.1 1385010..1386185(+) (rarA) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCIK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCIK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=20776 NCTC11637_01367 SQJ09783.1 1385010..1386185(+) (rarA) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTGGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAACTAGAGGATTTGCGTCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGTTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCATTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCACCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTGGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAACTAGAGGATTTGCGTCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGTTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCATTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCACCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
36.779 |
100 |
0.391 |